BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1820.1
(683 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 119 8e-28
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 88 3e-18
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 67 2e-11
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 59 2e-10
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 168/370 (45%), Gaps = 38/370 (10%)
Query: 178 LRDSGF-----KGTTFTWTNRQFQGTLIKERLDRALTNHSWLMDFPSSL-VTHLPGVGSD 231
LRDS +G +TW+N Q +I+ +LDRA+ N W FPS++ V L GV SD
Sbjct: 256 LRDSDLVDIPSRGVHYTWSNHQDDNPIIR-KLDRAIANGDWFSSFPSAIAVFELSGV-SD 313
Query: 232 HIPILLTTSANANLGKRLFKFIRTWMSHPDCGEFIKGHW------SSILQSIQPKLNNLA 285
H P ++ K+ F++ +HP + W S + S+ L
Sbjct: 314 HSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAK 373
Query: 286 INLARWNKRVFGHLDTRIRHLTEAIQ--QAANGQDLHDLNLQLEEAYNQ--------LES 335
N++ FG++ + + ++++ Q+ + D ++E + LES
Sbjct: 374 KCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALES 433
Query: 336 LWKEN------KLGDQNTKFFHAKAINRNRKNRIT------AIKDTNGTWVQEDLDIANI 383
+++ + GD NT+FFH + KN I ++ N T V+E I
Sbjct: 434 FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKE--MIVAY 491
Query: 384 FSTNLRSISTTSDPNISEELLDLFSSRIPDSSNLALISVPSEQEIYASVKSLKADSAPGP 443
++ L S S P+ + + D+ R D+ L ++PS++EI A+V ++ + APGP
Sbjct: 492 YTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGP 551
Query: 444 DGFPPLFYHANWDTVKMDIIKLVSDFFSQTLLPEQVNHTHICLIPKTKTPQTTSDYRPIS 503
D F F+ +W VK I V +FF L ++ N T I LIPK S +RP+S
Sbjct: 552 DSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVS 611
Query: 504 LMNTTYKIIT 513
YKIIT
Sbjct: 612 CCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 516 MANRLKLVLPDIISPFQAAYVPGRQITDNIIISQEIVHSFKITKGSKSYFALKLDMSKAF 575
M RLK ++ ++I P QA+++PGR TDNI+ QE VHS + KG K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 576 DRIEWSFLENIMQRMGFHSKWISLVHTCISTSTMAVLINGRPG----PTFNVSR-GIRQG 630
DRI W +LE+ + GF W+ + + GR P + R G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 631 DPLSPF 636
D +PF
Sbjct: 121 DMAAPF 126
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 123/289 (42%), Gaps = 48/289 (16%)
Query: 138 TPWVVIGDLNTILHPSEKEGGRKEITSHVTKINQMITNLGL-------RDSGF-----KG 185
+PW+V+GD N I +T H + + I+ GL RDS +G
Sbjct: 120 SPWLVVGDFNQI----------ASVTEHYSLMPSNISLQGLEDLQACMRDSDLVDLPCRG 169
Query: 186 TTFTWTNRQFQGTLIKERLDRALTNHSWLMDFPSSLVTHLPGVGSDHIPILLTTSANANL 245
+TW+N Q Q I +LDRA+ N WL FP++ P SDH ++ + + L
Sbjct: 170 VLYTWSNHQ-QDNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACMVILNNSPPL 228
Query: 246 GKRL-FKFIRTWMSHPDCGEFIKGHWSSILQSIQPKLNNLAINLARWNKRV-FGHLDTRI 303
K+ FK+ +HPD FI SSI LA W K + G +
Sbjct: 229 SKKKSFKYFSFLSTHPD---FI----SSI--------------LAAWQKEIAVGSFMFSL 267
Query: 304 RHLTEAIQQAANGQDLHDL-NLQLEEAYNQLESLWKENKLGDQNTKFFHAKAIN-RNRKN 361
L + ++A G + N+Q + N + L++ + +N FF A + +K+
Sbjct: 268 GELLKEAKKACRGLNRRGFSNIQAQLMSNPSDFLFRAEHVARKNWNFFAAALESFYKQKS 327
Query: 362 RITAIKDTNGTWVQEDLDIANIFSTNLRSISTTSDPNISEELLDLFSSR 410
RI +K+ + + L+ A++ + + +T IS + SSR
Sbjct: 328 RIKWLKEGDLELLTSYLEEADLIMSKHSTPRSTRSFKISRDHSTPRSSR 376
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 59.3 bits (142), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 37/67 (55%)
Query: 612 LINGRPGPTFNVSRGIRQGDPLSPFLFALAMEGLSRLLETNRASVPFQGFPIPKTNINIK 671
+ING P SRG+RQGDPLSP+LF L E LS L + G + + I
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 672 HLLFADD 678
HLLFADD
Sbjct: 73 HLLFADD 79