BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1860.1
(731 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 117 4e-27
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 88 3e-18
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 85 2e-16
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 82 4e-16
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 82 4e-16
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 152/365 (41%), Gaps = 75/365 (20%)
Query: 85 LRDAGFKGTTFTWTNRQFQGNLIKERLDRALTNHSWLMDFPSSL-VTHLPGVGSDHIPIL 143
L D +G +TW+N Q N I +LDRA+ N W FPS++ V L GV SDH P +
Sbjct: 261 LVDIPSRGVHYTWSNHQ-DDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCI 318
Query: 144 LTTSANANLGKRPFKFIRTWMSHP-------------------------------DCGEF 172
+ K+ F++ +HP C +
Sbjct: 319 IILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKL 378
Query: 173 IKGQDLHDLNMQLEEAYNQLESL---------------------------------WKEK 199
+ Q ++ + +EA + LES+ +++K
Sbjct: 379 LNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQK 438
Query: 200 SRNDNIKLGDQNTKFFHAKAINRNRKNRIT------AIKDTNGTWVQEDLDIANIFSTNL 253
SR ++ GD NT+FFH + KN I ++ N T V+E I ++ L
Sbjct: 439 SRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEM--IVAYYTHLL 496
Query: 254 RSISTTSVPDISDELLDLFSSQIQDSSNLALISVPSEQEIYASVKSLKADSAPGPDGFPP 313
S S PD + D+ + D+ L ++PS++EI A+V ++ + APGPD F
Sbjct: 497 GSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTA 556
Query: 314 LFYRANWDTVKLDIINLVSDFFSQTILPEQVNHTHICLIPKTKTPQTTSDYRPISLMNTT 373
F+ +W VK I V +FF L ++ N T I LIPK S +RP+S
Sbjct: 557 EFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVV 616
Query: 374 YKIIT 378
YKIIT
Sbjct: 617 YKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 381 MVNRLKLVLPDIISPFQAAYVPGHQITDNIIISQEIVHSFKITKGSKSYFALKLDMSKAF 440
MV RLK ++ ++I P QA+++PG TDNI+ QE VHS + KG K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 441 DRIEWSFLENIMHRMGFHPKWISLVHTCISTSTMAVLINGRPG----PTFNVSR-GIRQG 495
DRI W +LE+ + GF W+ + + GR P + R G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 496 DPLSPF 501
D +PF
Sbjct: 121 DMAAPF 126
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 535 IKHLLFADDCIIFGQNSLVNINSLQHILDTFCSVSGQMINFTKSTIFFSKNTHPKFKRMI 594
I HL FADD ++F +I + I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 595 IRNFKVHQSSNMDKYLGTHLFIGANKRKLFSSLTTQIQLKLSKWQASLLSPAGRSIVIQT 654
+ +F + +YLG L + L +I++++ KW A LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 655 IAAAVPRYQMQCFALPKSISDRIEVLQRTFWWGKSK---SIHTINWSAICLPKKLGGLGF 711
+ ++ + M F LP + I+ + +F W + + WS +C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 712 R 712
R
Sbjct: 187 R 187
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 535 IKHLLFADDCIIFGQNSLVNINSLQHILDTFCSVSGQMINFTKSTIFFSKNTHPKFKRMI 594
I HL FADD ++F +I + I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 595 IRNFKVHQSSNMDKYLGTHLFIGANKRKLFSSLTTQIQLKLSKWQASLLSPAGRSIVIQT 654
+ +F + +YLG L + L +I++++ KW A LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 655 IAAAVPRYQMQCFALPKSISDRIEVLQRTFWWGKSK---SIHTINWSAICLPKKLGGLGF 711
+ ++ + M F LP + I+ + +F W + + WS +C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 712 R 712
R
Sbjct: 187 R 187
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 535 IKHLLFADDCIIFGQNSLVNINSLQHILDTFCSVSGQMINFTKSTIFFSKNTHPKFKRMI 594
I HL FADD ++F +I + I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 595 IRNFKVHQSSNMDKYLGTHLFIGANKRKLFSSLTTQIQLKLSKWQASLLSPAGRSIVIQT 654
+ +F + +YLG L + L +I++++ KW A LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 655 IAAAVPRYQMQCFALPKSISDRIEVLQRTFWWGKSK---SIHTINWSAICLPKKLGGLGF 711
+ ++ + M F LP + I+ + +F W + + WS +C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 712 R 712
R
Sbjct: 187 R 187