BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1870.1
(410 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 113 4e-27
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 104 7e-24
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 88 4e-19
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 81 1e-16
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 66 7e-12
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 113 bits (282), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/426 (25%), Positives = 187/426 (43%), Gaps = 53/426 (12%)
Query: 5 VNKGTNINIWYDYWIHNHPPPICNTTNSTLTMVSQLIIDNH-----WNTNIITQCFNNDI 59
+ G NI I D + +HPP NT + M + + W+ + I+Q +
Sbjct: 42 IGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSD 101
Query: 60 CNSILSINL-QEHLDDTARWTLTKSGKFTIKSMYYYLRTE--------HYEYETMEWNF- 109
I I L + D W +G++T++S Y+ L + + + +++
Sbjct: 102 HGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR 161
Query: 110 IWNLPIQPKIKLFLWKCCTNSLPVRGKI---GQFIGQTFECVFC-RAHESLVHALLHCEL 165
IWNLPI PK+K FLW+ + +L ++ G I + C C R +ES+ HAL C
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPF 219
Query: 166 ATVVW-----------FHFSIFSGNITNLTDWIISWKDIDEQISSFFAN----ILWQIWK 210
AT+ W + F NI+N+ +++ D +S F ++W+IWK
Sbjct: 220 ATMAWRLSDSSLIRNQLMSNDFEENISNILNFV-----QDTTMSDFHKLLPVWLIWRIWK 274
Query: 211 ARCDRCFSNVNILPMMVI--------DQVKSTPNLLKNQSPSQPMDKNTL-WSPPKAPFI 261
AR + F+ P + D + +T + K SP++ + +N + W P A ++
Sbjct: 275 ARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYV 334
Query: 262 KINVDASFLEGKVMAGIGCIMVDDHANFLA-ASACNYRGQNAEECECWAIVKALQWSTSQ 320
K N DA F K+ A G I+ + + ++ S N E E A++ ALQ + +
Sbjct: 335 KCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIR 394
Query: 321 KFDYLHIESDNSNIVQTLNGTQVDISWQAGKLIDKVRLLEGKFTKVIYTHINRDGNEKAD 380
+ + +E D ++ +NG S ++ + KF + + I R GN+ A
Sbjct: 395 GYTQVFMEGDCQTLINLINGISFHSS--LANHLEDISFWANKFASIQFGFIRRKGNKLAH 452
Query: 381 ILAKWS 386
+LAK+
Sbjct: 453 VLAKYG 458
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 104 bits (259), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 184/426 (43%), Gaps = 50/426 (11%)
Query: 5 VNKGTNINIWYDYWIHNHP----------PPICNTTNSTLTMVSQLIIDN--HWNTNIIT 52
V G +I IW W+ + P PP + S++ VS LI ++ W ++I
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 53 QCFNNDICNSILSINLQ-EHLDDTARWTLTKSGKFTIKSMYYYL------RTEHYEYETM 105
F I + + D+ W T SG +T+KS Y+ L R+ E
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 106 EWN----FIWNLPIQPKIKLFLWKCCTNSLPVRGKIG-QFIGQTFECVFCRA-HESLVHA 159
N IW PKI+ FLWKC +NSLPV G + + + + C+ C + E++ H
Sbjct: 249 SLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHL 308
Query: 160 LLHCELATVVWFHFSI-------FSGNITNLTDWIISWKDID---EQISSFFANILWQIW 209
L C A + W SI ++ +I W+ + + + E+ S +LW++W
Sbjct: 309 LFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLW 368
Query: 210 KARCDRCFSNVNILPMMVIDQVK--------STPNLLKNQSPSQPMDKNTLWSPPKAPFI 261
K R + F V+ + + T P W PP ++
Sbjct: 369 KNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWV 428
Query: 262 KINVDASFLEGKVMAGIGCIMVDDHA--NFLAASACNYRGQNAEECECWAIVKALQWSTS 319
K N DA++ GIG ++ ++ ++ A A + ++ E E A+ A+ +
Sbjct: 429 KCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALP-KLKSVLEAELEAMRWAVLSLSR 487
Query: 320 QKFDYLHIESDNSNIVQTLNGTQVDISWQAGK-LIDKVRLLEGKFTKVIYTHINRDGNEK 378
+++Y+ ESD+ +++ LN ++ W + K I ++ L +FT+V + I R+GN
Sbjct: 488 FQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTL 544
Query: 379 ADILAK 384
A+ +A+
Sbjct: 545 AERVAR 550
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 87.8 bits (216), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 127/290 (43%), Gaps = 25/290 (8%)
Query: 117 PKIKLFLWKCCTNSLPVRGK-IGQFIGQTFECVFCRAHESLVHALLHCELATVVWFHFSI 175
PKIKLFLWK +LPV + + + I T++C C A E+ H L HC+ A VW +
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 176 FSGNIT---------NLTDWIISWKDIDEQISSFFANILWQIWKARCDRCFSNVNILPMM 226
G+I NL I + ++ F I W IWKAR F N +
Sbjct: 62 QLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH---FS 118
Query: 227 VIDQV-KSTPNLLKNQSPSQPMDKNTLWSPPKAPFIKIN------VDASFLEGKVMAGIG 279
VI+ V K+ + L QS + K + +P + VDA++ + +AG G
Sbjct: 119 VIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSG 178
Query: 280 -CIMVDDHA--NFLAASACNYRGQNAEECECWAIVKALQWSTSQKFDYLHIESDNSNIVQ 336
H+ SA R + E WAI A+ + + L + SD+ +IV
Sbjct: 179 WVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVD 238
Query: 337 TLNGTQVDISWQAGKLIDKVRLLEGKFTKVIYTHINRDGNEKADILAKWS 386
LN + V ++ G L++ +R + +F + + I R N AD AK S
Sbjct: 239 ALN-SNVSLNEIFGLLVE-IRSIRNRFRSISFQFIPRLVNSIADAAAKLS 286
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 36/305 (11%)
Query: 110 IWNLPIQPKIKLFLWKCCTNSLPVRGKIG-QFIGQTFECVF-CRAHESLVHALLHCELAT 167
IW L PKIK FLWK + +L + + I +C C+ E+ H C A
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 168 VVWFHFSIFSGNITNLTDWIISWKDIDEQISSFFAN-----------ILWQIWKARCDRC 216
VW I + T I ++ +SS AN ILW++WK+R
Sbjct: 78 QVWRASGIPHQELR--TTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLV 135
Query: 217 FSNVNILPMMVIDQ--------------VKSTPNLLKNQSPSQPMDKNTLWSPPKAPFIK 262
F +I + + V+S + + QP T W P + +IK
Sbjct: 136 FQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIK 195
Query: 263 INVDASFLEGKVMAGIGCIMVDDHANFLAAS-ACNYRGQNAEECECWAIVKALQWSTSQK 321
N D +F A G +M D++ ++ + A ++ E E A++ A+Q + SQ
Sbjct: 196 YNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQG 255
Query: 322 FDYLHIESDNSNIVQTLNGTQVDISWQAGKL--IDKVRLLEGKFTKVIYTHINRDGNEKA 379
+ + E D+ + + +N +++ G+ I + R + +F + ++ + R N+ A
Sbjct: 256 YRKVIFEGDSKQVEELMNNEKLNF----GRFNWIREGRFWQKRFEEAVFKWVPRTNNQPA 311
Query: 380 DILAK 384
DILAK
Sbjct: 312 DILAK 316
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 204 ILWQIWKARCDRCFSNVNILPMMVIDQV---------KSTPNLLKNQSPSQPMDKNTLWS 254
++W+IWK+ D F++ ++ + N +N + + +NT WS
Sbjct: 47 LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWS 106
Query: 255 PPKAPFIKINVDASFLEGKVMAGIGCIMVDDHANFLAASACNYRGQ-NAEECECWAIVKA 313
PP +K N DAS E ++G+G I+ + + ++G+ EE EC ++ A
Sbjct: 107 PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA 166
Query: 314 LQWSTSQKFDYLHIESDNSNIVQTLNGTQVDISWQAGKLIDKVRLLEGKFTKVIYTHINR 373
+Q S + E DN I + +N + Q +D ++ F + ++ +R
Sbjct: 167 IQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ--HFLDTIQSWIPSFESIEFSFKHR 224
Query: 374 DGNEKADILAK 384
+ N AD LAK
Sbjct: 225 EQNGCADFLAK 235