BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000066.1_g1950.1
         (714 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    96   9e-22
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    50   7e-07

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 95.5 bits (236), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 21  SPYDVHPS-GSPTTVMITPLLSG-DNYPSWSRGMTKALRAKDKLGFVNGTIPKPTNPNDL 78
           SPY + P    P+   I  L    DNY +W       LR   K GF++GT+PKP   + L
Sbjct: 16  SPYYLPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPL 75

Query: 79  HS-WERCNDLVVSWITNSIAPDLRQSVLYDDVASDIWKNLYDRFYQTNAPKVFQLKRAIS 137
           +  WE+CN +V+ W+ NS+   L +SV+Y + A  +W++L   F      K++QL+R ++
Sbjct: 76  YQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLA 135

Query: 138 SLKQETSDVSSYFTRLKSLQDELLSLMAIDPCICG 172
           +L+Q    V  YF +L  +  EL     I  C CG
Sbjct: 136 TLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCG 170


>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 398 SHCVFQDLRRTRTIGLGECHEGLYLLRTEPRIFSISSSISNNLVSSFDLWHWRLGHPSVS 457
           S  V + L+  RTI  G  H+ LY+L+    + +  S+++        LWH RL H S  
Sbjct: 25  SEGVLKVLKGCRTILKGNRHDSLYILQGS--VETGESNLAETAKDETRLWHSRLAHMS-Q 81

Query: 458 RYKYFISRLPCMRSSIINKNKVPCVICPQSKQTRLPFPISTSKSTHPFQLIHADVWGPFS 517
           R    + +   + SS ++  K  C  C   K  R+ F      + +P   +H+D+WG  S
Sbjct: 82  RGMELLVKKGFLDSSKVSSLKF-CEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPS 140

Query: 518 TPSTF 522
            P +F
Sbjct: 141 VPLSF 145

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