BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g2030.1
(978 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 122 7e-32
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 122 bits (306), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 766 DHLRQVLERLMEHQLYAKFEKCEFWQEEVKFFGH--VISSIGVSVDPSKVEAVLNWKQPT 823
+HL VL+ +HQ YA +KC F Q ++ + GH +IS GVS DP+K+EA++ W +P
Sbjct: 2 NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61
Query: 824 SATEVRSFLGLAGYYRRFIKGFSSIAGPLTNLTKKEVPFRWSTKCDLAFQELKTRLTTAP 883
+ TE+R FLGL GYYRRF+K + I PLT L KK +W+ LAF+ LK +TT P
Sbjct: 62 NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLP 120
Query: 884 VLTIPE 889
VL +P+
Sbjct: 121 VLALPD 126