BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g2040.1
(1353 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 382 e-113
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 382 e-113
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 178 3e-50
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 101 2e-24
AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801... 95 9e-23
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 382 bits (982), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/538 (36%), Positives = 299/538 (55%), Gaps = 21/538 (3%)
Query: 786 PNSPNTHDTSNLELRPSSSRTRVMPSRFDDYVVTNDNDDSNEDFASFAFFADCDPI---- 841
P++ +D + S RTR P+ DY + + D + F + P+
Sbjct: 18 PSANIQNDVPEPSVHTSHRRTR-KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSF 76
Query: 842 -----------TFEEAVKNVGWISAMDDEIHSIEKNDTWELISLPAGKKSIGVKWVFKTK 890
T+ EA + + W AMDDEI ++E TWE+ +LP KK IG KWV+K K
Sbjct: 77 LVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136
Query: 891 YKPDGQVDRLKARLVVKGYKQKPGIDYYEVFAPVVRLDTIRMVIALAAQNKWKLHQMDVK 950
Y DG ++R KARLV KGY Q+ GID+ E F+PV +L ++++++A++A + LHQ+D+
Sbjct: 137 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 196
Query: 951 SAFLNRVLEEEVYIDQPPGYVKKGQEE----KVLRLKKALYGLKQAPRAWYTRIDTYFLE 1006
+AFLN L+EE+Y+ PPGY + + V LKK++YGLKQA R W+ + +
Sbjct: 197 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256
Query: 1007 SGFEKCPYEPTVYIKFNSHGNILIVCLYVDDLIFTGSDTTMFEEFKETMTNKFEMTDLGL 1066
GF + + T ++K + L V +YVDD+I ++ +E K + + F++ DLG
Sbjct: 257 FGFVQSHSDHTYFLKITA-TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGP 315
Query: 1067 MSYFLGLEVLQTGEEIFVSQKKYAADILKQFKMENCNAIKTPIESRQCLDYNGKGEFVNP 1126
+ YFLGLE+ ++ I + Q+KYA D+L + + C P++ + G+FV+
Sbjct: 316 LKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDA 375
Query: 1127 TYYRSLVGSLRYLTSTRPDIVFGVGLISRFMEKPSQIHLQAAKRILRYIKGTQTHGILYS 1186
YR L+G L YL TR DI F V +S+F E P H QA +IL YIKGT G+ YS
Sbjct: 376 KAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 435
Query: 1187 PTDNFNLVGFTDSDWAGDINDRKSTSGFVFHLGSGVFSWSSKKQQVVALSTAEAEYIAAA 1246
L F+D+ + + R+ST+G+ LG+ + SW SKKQQVV+ S+AEAEY A +
Sbjct: 436 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 495
Query: 1247 SCASQAVWLRRLLDEFSQKQESPTTIFCDNKSTIALTKNPVFHGRSKHIDIKYHYIRE 1304
+ +WL + E PT +FCDN + I + N VFH R+KHI+ H +RE
Sbjct: 496 FATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 382 bits (982), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/538 (36%), Positives = 299/538 (55%), Gaps = 21/538 (3%)
Query: 786 PNSPNTHDTSNLELRPSSSRTRVMPSRFDDYVVTNDNDDSNEDFASFAFFADCDPI---- 841
P++ +D + S RTR P+ DY + + D + F + P+
Sbjct: 18 PSANIQNDVPEPSVHTSHRRTR-KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSF 76
Query: 842 -----------TFEEAVKNVGWISAMDDEIHSIEKNDTWELISLPAGKKSIGVKWVFKTK 890
T+ EA + + W AMDDEI ++E TWE+ +LP KK IG KWV+K K
Sbjct: 77 LVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136
Query: 891 YKPDGQVDRLKARLVVKGYKQKPGIDYYEVFAPVVRLDTIRMVIALAAQNKWKLHQMDVK 950
Y DG ++R KARLV KGY Q+ GID+ E F+PV +L ++++++A++A + LHQ+D+
Sbjct: 137 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 196
Query: 951 SAFLNRVLEEEVYIDQPPGYVKKGQEE----KVLRLKKALYGLKQAPRAWYTRIDTYFLE 1006
+AFLN L+EE+Y+ PPGY + + V LKK++YGLKQA R W+ + +
Sbjct: 197 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256
Query: 1007 SGFEKCPYEPTVYIKFNSHGNILIVCLYVDDLIFTGSDTTMFEEFKETMTNKFEMTDLGL 1066
GF + + T ++K + L V +YVDD+I ++ +E K + + F++ DLG
Sbjct: 257 FGFVQSHSDHTYFLKITA-TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGP 315
Query: 1067 MSYFLGLEVLQTGEEIFVSQKKYAADILKQFKMENCNAIKTPIESRQCLDYNGKGEFVNP 1126
+ YFLGLE+ ++ I + Q+KYA D+L + + C P++ + G+FV+
Sbjct: 316 LKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDA 375
Query: 1127 TYYRSLVGSLRYLTSTRPDIVFGVGLISRFMEKPSQIHLQAAKRILRYIKGTQTHGILYS 1186
YR L+G L YL TR DI F V +S+F E P H QA +IL YIKGT G+ YS
Sbjct: 376 KAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 435
Query: 1187 PTDNFNLVGFTDSDWAGDINDRKSTSGFVFHLGSGVFSWSSKKQQVVALSTAEAEYIAAA 1246
L F+D+ + + R+ST+G+ LG+ + SW SKKQQVV+ S+AEAEY A +
Sbjct: 436 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 495
Query: 1247 SCASQAVWLRRLLDEFSQKQESPTTIFCDNKSTIALTKNPVFHGRSKHIDIKYHYIRE 1304
+ +WL + E PT +FCDN + I + N VFH R+KHI+ H +RE
Sbjct: 496 FATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 178 bits (452), Expect = 3e-50, Method: Composition-based stats.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 7/229 (3%)
Query: 1029 LIVCLYVDDLIFTGSDTTMFEEFKETMTNKFEMTDLGLMSYFLGLEVLQTGEEIFVSQKK 1088
+ + LYVDD++ TGS T+ +++ F M DLG + YFLG+++ +F+SQ K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1089 YAADILKQFKMENCNAIKTPIESRQCLDYNGK---GEFVNPTYYRSLVGSLRYLTSTRPD 1145
YA IL M +C + TP+ L N ++ +P+ +RS+VG+L+YLT TRPD
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLP----LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPD 116
Query: 1146 IVFGVGLISRFMEKPSQIHLQAAKRILRYIKGTQTHGILYSPTDNFNLVGFTDSDWAGDI 1205
I + V ++ + M +P+ KR+LRY+KGT HG+ N+ F DSDWAG
Sbjct: 117 ISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCT 176
Query: 1206 NDRKSTSGFVFHLGSGVFSWSSKKQQVVALSTAEAEYIAAASCASQAVW 1254
+ R+ST+GF LG + SWS+K+Q V+ S+ E EY A A A++ W
Sbjct: 177 STRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 101 bits (252), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 67/101 (66%)
Query: 839 DPITFEEAVKNVGWISAMDDEIHSIEKNDTWELISLPAGKKSIGVKWVFKTKYKPDGQVD 898
+P + A+K+ GW AM +E+ ++ +N TW L+ P + +G KWVFKTK DG +D
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 899 RLKARLVVKGYKQKPGIDYYEVFAPVVRLDTIRMVIALAAQ 939
RLKARLV KG+ Q+ GI + E ++PVVR TIR ++ +A Q
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ 127
>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
Length = 97
Score = 94.7 bits (234), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Query: 8 QLPRFCGKNFDQWCIQMKALFGFQEIWEVVEFGYVEPVDQAAHEALSQVQKDSLRENRKK 67
Q+P N+D W ++MKA+ G ++WE+VE G++EP ++ + LSQ QKD LR++RK+
Sbjct: 9 QVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGS---LSQTQKDGLRDSRKR 65
Query: 68 DKKALFFLYQAVDEIVFEKISRAETAKEVWGL 99
DKKAL +YQ +DE FEK+ A +AK+ G
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKDGLGF 97