BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0020.1
(197 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 45 2e-06
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 46 3e-06
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 46 1e-05
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 46 1e-05
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 2 NTTAYLVNISPSTSIECKTPNEVWSGNPGNYENLRIFGCPTYAHVKEA 49
NT +++N PST+I P+EVW + Y LR FGC Y H E
Sbjct: 28 NTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAYIHCDEG 75
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 45.8 bits (107), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 149 WSLPMNEEIESLRKNRAWVLAEQPKGRKIVGSKWVFKKKEGIPGVED 195
W M EE+++L +N+ W+L P + I+G KWVFK K G D
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 133 EPCTYEEAKRSDESMQWSLPMNEEIESLRKNRAWVLAEQPKGRKIVGSKWVFKKK 187
EP TY EAK E + W M++EI ++ W + P +K +G KWV+K K
Sbjct: 85 EPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 133 EPCTYEEAKRSDESMQWSLPMNEEIESLRKNRAWVLAEQPKGRKIVGSKWVFKKK 187
EP TY EAK E + W M++EI ++ W + P +K +G KWV+K K
Sbjct: 85 EPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136