BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0030.1
(129 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 60 3e-12
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 60.1 bits (144), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 59 GVLRVSRGSLTVMKGLKKNGIYVLQGNTVTGSVAVSSSDKEVETTKLWHMQLGHIIERGM 118
GVL+V +G T++KG + + +Y+LQG+ TG ++ + K + T+LWH +L H+ +RGM
Sbjct: 27 GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAK--DETRLWHSRLAHMSQRGM 84
Query: 119 AILSKQGLL 127
+L K+G L
Sbjct: 85 ELLVKKGFL 93