BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0120.1
(554 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 129 1e-31
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 94 1e-19
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 92 2e-19
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 92 2e-19
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 92 2e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 139/283 (49%), Gaps = 33/283 (11%)
Query: 64 AVPLYQMQCFAIPKGICKSIKSAQRNFWW---GKSRGLCLKAWSHICLPKVQGGLGLHLP 120
A+P Y M CF +PK +CK I S +FWW +++G+ KAW H+ K +GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 121 ELDNQALLSKLVWRLKTNPEGLWAKLLKDKYFPHSTTP--GPAKPHHSWIWKNIRKHYAY 178
E N ALL K +WR+ + PE L AK+ K +YF H + P P S++WK+I
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 179 IEELSQWEVQSGTDINIWEDNWIPDSDGKVSNLHN-----------SNLTKVSQLI--TN 225
+ + ++ V +G DI IW W+ DS + L S++ KVS LI +
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWL-DSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 226 NNWDEDLLNANFNSATQNLIKSIPVNPEGK---DHLIWKLSKSGKFTVSSLYKHLSTTNN 282
W +D++ F + LI + P G+ D W + SG +TV S Y L+ N
Sbjct: 180 REWRKDVIEMLFPEVERKLIGEL--RPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIIN 237
Query: 283 IQNSTLRN--------WKFLWSIPAIPRIKLFIWKICNQALPV 317
++S ++ +W P+I+ F+WK + +LPV
Sbjct: 238 KRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPV 280
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 23/204 (11%)
Query: 335 ILWIIWKTRCDHCFQ-HEINELPKIIKMIDNFPKVNIKPSKHK--------NKQVVRWKP 385
+LW +WK R + F+ E N + + D+ + I+ RW+P
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRP 422
Query: 386 PTNGYIKINVDASFTNISSIVGLSLIAHDENA--KFIHARAKTSRGRNNEECEAKAILYG 443
P + ++K N DA++ + G+ + +E K++ ARA + ++ E E +A+ +
Sbjct: 423 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEAMRWA 481
Query: 444 LEWAKAQGHRSIIVESDNFNLISHLRNHRHTIQWQSL-THVRKIQDIKSDF---EIQIYP 499
+ + +I ESD+ LI L N W SL ++ +Q + S F + P
Sbjct: 482 VLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIP 538
Query: 500 RRDIVTNEQV----VDYINYFPRL 519
R E+V + ++NY P+L
Sbjct: 539 REGNTLAERVARESLSFLNYDPKL 562
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 14 KYLGSQLFIGAQKTKVFKDLLEQIQNKLNKWNHCFLSQAGRTVVLSAIAAAVPLYQMQCF 73
+YLG L T + L+E+I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGICKSIKSAQRNFWWGKSRGLCLK---AWSHICLPKVQGGLGLHLPELDNQALLSK 130
+P K I S +F W K AWS +C PK +GGLG+ + N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LVWRLKTNPEGLWAK-----LLKDKYF---PHSTTPGPAKPHHSWIWKNIRKHYAYIEEL 182
L+WR+ ++ LW + LL+ F +TT G SW+WK I KH A
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG------SWMWKKILKHRALASGF 252
Query: 183 SQWEVQSGTDINIWEDNW 200
+ ++ +G++ + W DNW
Sbjct: 253 VKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 14 KYLGSQLFIGAQKTKVFKDLLEQIQNKLNKWNHCFLSQAGRTVVLSAIAAAVPLYQMQCF 73
+YLG L T + L+E+I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 AIPKGICKSIKSAQRNFWWGKSRGLCLK---AWSHICLPKVQGGLGLHLPELDNQALLSK 130
+P K I S +F W K AWS +C PK +GGLG+ + N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 131 LVWRLKTNPEGLWAK-----LLKDKYF---PHSTTPGPAKPHHSWIWKNIRKHYAYIEEL 182
L+WR+ ++ LW + LL+ F +TT G SW+WK I KH A
Sbjct: 146 LIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLG------SWMWKKILKHRALASGF 198
Query: 183 SQWEVQSGTDINIWEDNW 200
+ ++ +G++ + W DNW
Sbjct: 199 VKHDIHNGSNTSFWFDNW 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 14 KYLGSQLFIGAQKTKVFKDLLEQIQNKLNKWNHCFLSQAGRTVVLSAIAAAVPLYQMQCF 73
+YLG L T + L+E+I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGICKSIKSAQRNFWWGKSRGLCLK---AWSHICLPKVQGGLGLHLPELDNQALLSK 130
+P K I S +F W K AWS +C PK +GGLG+ + N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LVWRLKTNPEGLWAK-----LLKDKYF---PHSTTPGPAKPHHSWIWKNIRKHYAYIEEL 182
L+WR+ ++ LW + LL+ F +TT G SW+WK I KH A
Sbjct: 200 LIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLG------SWMWKKILKHRALASGF 252
Query: 183 SQWEVQSGTDINIWEDNW 200
+ ++ +G++ + W DNW
Sbjct: 253 VKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 14 KYLGSQLFIGAQKTKVFKDLLEQIQNKLNKWNHCFLSQAGRTVVLSAIAAAVPLYQMQCF 73
+YLG L T + L+E+I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGICKSIKSAQRNFWWGKSRGLCLK---AWSHICLPKVQGGLGLHLPELDNQALLSK 130
+P K I S +F W K AWS +C PK +GGLG+ + N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LVWRLKTNPEGLWAK-----LLKDKYF---PHSTTPGPAKPHHSWIWKNIRKHYAYIEEL 182
L+WR+ ++ LW + LL+ F +TT G SW+WK I KH A
Sbjct: 200 LIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLG------SWMWKKILKHRALASGF 252
Query: 183 SQWEVQSGTDINIWEDNW 200
+ ++ +G++ + W DNW
Sbjct: 253 VKHDIHNGSNTSFWFDNW 270