BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0220.1
(322 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46870.1 | Pentatricopeptide repeat (PPR) superfamily protein... 345 e-120
AT3G46870.2 | Pentatricopeptide repeat (PPR) superfamily protein... 337 e-116
AT1G62350.2 | Pentatricopeptide repeat (PPR) superfamily protein... 191 3e-59
AT1G62350.1 | Pentatricopeptide repeat (PPR) superfamily protein... 177 1e-54
AT1G62350.3 | Pentatricopeptide repeat (PPR) superfamily protein... 133 3e-38
>AT3G46870.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr3:17263011-17264022 FORWARD LENGTH=257 | 201606
Length = 257
Score = 345 bits (886), Expect = e-120, Method: Compositional matrix adjust.
Identities = 162/219 (73%), Positives = 192/219 (87%), Gaps = 3/219 (1%)
Query: 104 IHEINTKPVFVSDSFFRYYHDGRPRGPLWRGKKLIGKEALFVILGMKRFKGDEENLNKFI 163
+H I KP V F +HDGRPRGPLWRGKKLIGKEALFVILG+KR K D+E L+KFI
Sbjct: 42 LHPIPPKPFTV---FVSRFHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFI 98
Query: 164 KTHVLRLLKMDMIAVLNELERQEEVSLALKMFRIIRKQDWYKADVFMYKDLIISLAKSKK 223
KTHV RLLK+DM+AV+ ELERQEE +LA+KMF +I+KQ+WY+ DVFMYKDLI+SLAKSK+
Sbjct: 99 KTHVFRLLKLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKR 158
Query: 224 MEEAIQVWESMREEDLFPDSQTYAEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRI 283
M+EA+ +WE M++E+LFPDSQTY EVIRGFLR G PADAMN+YEDM KSPDPPEELPFR+
Sbjct: 159 MDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRV 218
Query: 284 LLKGLLPHPLLRNRVKQDFEEIFPDRNIYDPPEEIFGMC 322
LLKGLLPHPLLRN+VK+DFEE+FP+++ YDPPEEIFG C
Sbjct: 219 LLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEEIFGRC 257
>AT3G46870.2 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr3:17263011-17264022 FORWARD LENGTH=269 | 201606
Length = 269
Score = 337 bits (864), Expect = e-116, Method: Compositional matrix adjust.
Identities = 162/231 (70%), Positives = 192/231 (83%), Gaps = 15/231 (6%)
Query: 104 IHEINTKPVFVSDSFFRYYHDGRPRGPLWRGKKLIGKEALFVILGMKRFKGDEENLNKFI 163
+H I KP V F +HDGRPRGPLWRGKKLIGKEALFVILG+KR K D+E L+KFI
Sbjct: 42 LHPIPPKPFTV---FVSRFHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFI 98
Query: 164 KTHVLRLLKMDMIAVLNELERQEEVSLALK------------MFRIIRKQDWYKADVFMY 211
KTHV RLLK+DM+AV+ ELERQEE +LA+K MF +I+KQ+WY+ DVFMY
Sbjct: 99 KTHVFRLLKLDMLAVIGELERQEETALAIKCSTKCLNGANIRMFEVIQKQEWYQPDVFMY 158
Query: 212 KDLIISLAKSKKMEEAIQVWESMREEDLFPDSQTYAEVIRGFLRYGSPADAMNIYEDMKK 271
KDLI+SLAKSK+M+EA+ +WE M++E+LFPDSQTY EVIRGFLR G PADAMN+YEDM K
Sbjct: 159 KDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLK 218
Query: 272 SPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPDRNIYDPPEEIFGMC 322
SPDPPEELPFR+LLKGLLPHPLLRN+VK+DFEE+FP+++ YDPPEEIFG C
Sbjct: 219 SPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEEIFGRC 269
>AT1G62350.2 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr1:23056485-23057935 FORWARD LENGTH=252 | 201606
Length = 252
Score = 191 bits (484), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 146/220 (66%), Gaps = 3/220 (1%)
Query: 102 YPIHEINTKPVFVSDSFFRYYHDGRPRGP---LWRGKKLIGKEALFVILGMKRFKGDEEN 158
Y + + ++ +S R Y G P +WR KK + KE L +KR +
Sbjct: 18 YILRQFGSRNKEISVDSTRTYQSGPASSPSLSIWRRKKEMSKEGLIAAKELKRLQTQSVR 77
Query: 159 LNKFIKTHVLRLLKMDMIAVLNELERQEEVSLALKMFRIIRKQDWYKADVFMYKDLIISL 218
L++FI +HV RLLK D+++VL E +RQ +V L +K++ ++R++ WY+ D+F Y+D+++ L
Sbjct: 78 LDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVVRREIWYRPDMFFYRDMLMML 137
Query: 219 AKSKKMEEAIQVWESMREEDLFPDSQTYAEVIRGFLRYGSPADAMNIYEDMKKSPDPPEE 278
A++KK++E +VWE +++E++ D T+ +++RGFL P +AM +Y +M++SPD P
Sbjct: 138 ARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYGEMRESPDRPLS 197
Query: 279 LPFRILLKGLLPHPLLRNRVKQDFEEIFPDRNIYDPPEEI 318
LPFR++LKGL+P+P LR +VK DF E+FP +YDPPE+I
Sbjct: 198 LPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPEDI 237
>AT1G62350.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr1:23056653-23057935 FORWARD LENGTH=196 | 201606
Length = 196
Score = 177 bits (449), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 130/181 (71%)
Query: 138 IGKEALFVILGMKRFKGDEENLNKFIKTHVLRLLKMDMIAVLNELERQEEVSLALKMFRI 197
+ KE L +KR + L++FI +HV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 198 IRKQDWYKADVFMYKDLIISLAKSKKMEEAIQVWESMREEDLFPDSQTYAEVIRGFLRYG 257
+R++ WY+ D+F Y+D+++ LA++KK++E +VWE +++E++ D T+ +++RGFL
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 258 SPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPDRNIYDPPEE 317
P +AM +Y +M++SPD P LPFR++LKGL+P+P LR +VK DF E+FP +YDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 318 I 318
I
Sbjct: 181 I 181
>AT1G62350.3 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr1:23057504-23057935 FORWARD LENGTH=143 | 201606
Length = 143
Score = 133 bits (334), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 96/127 (75%)
Query: 192 LKMFRIIRKQDWYKADVFMYKDLIISLAKSKKMEEAIQVWESMREEDLFPDSQTYAEVIR 251
+++ ++R++ WY+ D+F Y+D+++ LA++KK++E +VWE +++E++ D T+ +++R
Sbjct: 2 FQLYEVVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVR 61
Query: 252 GFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPDRNI 311
GFL P +AM +Y +M++SPD P LPFR++LKGL+P+P LR +VK DF E+FP +
Sbjct: 62 GFLDNELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIV 121
Query: 312 YDPPEEI 318
YDPPE+I
Sbjct: 122 YDPPEDI 128