BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0230.1
(138 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 60 2e-11
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 60 2e-11
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 60 3e-11
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 49 2e-07
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 49 3e-07
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.5 bits (145), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 38 TGLAVNTEKSSISCAGMSDVQKEDTRVVLEFQLGTLPIRYLGLPLLASRLAYKDCIPLIN 97
+GL ++ EKS+I AG+ D K D F G LP+RYLGLPLL ++ D PL+
Sbjct: 42 SGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVE 101
Query: 98 RIQAR 102
+I+ R
Sbjct: 102 KIRVR 106
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.5 bits (145), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 38 TGLAVNTEKSSISCAGMSDVQKEDTRVVLEFQLGTLPIRYLGLPLLASRLAYKDCIPLIN 97
+GL ++ EKS+I AG+ D K D F G LP+RYLGLPLL ++ D PL+
Sbjct: 42 SGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVE 101
Query: 98 RIQAR 102
+I+ R
Sbjct: 102 KIRVR 106
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 60.1 bits (144), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 30 VLCKLCWGTGLAVNTEKSSISCAGMSDVQKEDTRVVLEFQLGTLPIRYLGLPLLASRLAY 89
+ K +GL ++ EKS+I AG+ D K D F G LP+RYLGLPLL ++
Sbjct: 34 IFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTT 93
Query: 90 KDCIPLINRIQAR 102
D PL+ +I+ R
Sbjct: 94 SDYGPLVEKIRVR 106
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 52 AGMSDVQKEDTRVVLEFQLGTLPIRYLGLPLLASRLAYKDCIPLINRIQAR 102
AG+ D K D F G LP+RYLGLPLL ++ D PL+ +I+ R
Sbjct: 2 AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVR 52
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 48.9 bits (115), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 52 AGMSDVQKEDTRVVLEFQLGTLPIRYLGLPLLASRLAYKDCIPLINRIQAR 102
AG+ D K D F G LP+RYLGLPLL ++ D PL+ +I+ R
Sbjct: 2 AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVR 52