BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0240.1
(454 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 53 3e-08
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 48 1e-06
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 127 KFSSNVWHMRLGHPNNRIFSRIINNNEVSTTSTNLSSLCQSCVLSKHHRLPYSPSTHRAT 186
K + +WH RL H + R ++ + ++ + C+ C+ K HR+ +S H
Sbjct: 66 KDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125
Query: 187 TPLFKLHCDLWG-PS 200
PL +H DLWG PS
Sbjct: 126 NPLDYVHSDLWGAPS 140
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 298 RHVVETGLALLHQSHLPKTFWPEAFGTACFLINRLPTMLLKNVCPFFLLFNHQPDYHFLR 357
R ++E ++L + LPKTF +A TA +IN+ P+ + P + F P Y +LR
Sbjct: 3 RTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLR 62
Query: 358 VFGCRCY 364
FGC Y
Sbjct: 63 RFGCVAY 69