BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000071.1_g0250.1
         (363 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    64   6e-11
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    50   9e-07

>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 21/252 (8%)

Query: 37  LVSVKLDHTNFLTWKKQVLPIMKSQDLFQFISNDATPPPPLLLDDATNQHIPNPAFHHWH 96
            V++ L+  N+  W++    +  S  +   I   +TP P       T +         W 
Sbjct: 23  FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTP------MTEKR--------WK 68

Query: 97  RVDQTLISWLNTTLSPSVLSQTPEFS-TAKAFFSHLESTFSAQNTARKSQLLLHLQTIQK 155
             D  +  W+  T++ S+L    +   TA+  +  LE+ F     AR  Q    L+T   
Sbjct: 69  ERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTI 128

Query: 156 HTMPMTEYVGKIKEISDAIAASNAAVPDTEHVLHTLRGLGSDYTSFVTAIETRNNLPTFA 215
             + + EY  K+K +SD +   ++ + D   V+H L GL   Y   +  I+ ++  P+F 
Sbjct: 129 DDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFT 188

Query: 216 QLLPLLFYHEMRLSQQQSQSSL------VQPSALVTKTQQYPTPTREGNQPRSSSSGFSR 269
           +   +L   E RLS +   S        +         QQ   P    N   +   G S+
Sbjct: 189 EARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRGRSK 248

Query: 270 PGFRGGRNGRGR 281
              RGG +  GR
Sbjct: 249 KKNRGGGSSDGR 260


>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 3   VANTTTTSSDSVDQQQPTHLSPTITIPSLTNLVPLVSVKLDHTNFLTWKKQVLPIMKSQD 62
           +A T  + S + D   P +L P I  PS  ++  L     D  N++ WK +    ++   
Sbjct: 1   MAETIKSVSPTSDPDSPYYLPPDIHHPSDFSIQKLSK---DEDNYVAWKIRFRSFLRVTK 57

Query: 63  LFQFISNDATPPPPLLLDDATNQHIPNPAFHHWHRVDQTLISWLNTTLSPSVLSQTPEFS 122
            F FI      P P            +P +  W + +  ++ WL  +++  +L       
Sbjct: 58  KFGFIDGTLPKPDPF-----------SPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAE 106

Query: 123 TAKAFFSHLESTFSAQNTARKSQLLLHLQTIQKHTMPMTEYVGKIKEI 170
           TA   +  L   F      +  QL   L T+++    + EY GK+ ++
Sbjct: 107 TAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKV 154

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