BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0260.1
(283 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 59 1e-10
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 48 NIQHGDAKCLNFTVKDKSWLWHLRLGHLNFDGMKTLASKNMVRGLPYIDHPN----KVCE 103
+++ G++ L T KD++ LWH RL H++ GM+ L K ++D K CE
Sbjct: 53 SVETGESN-LAETAKDETRLWHSRLAHMSQRGMELLVKKG------FLDSSKVSSLKFCE 105
Query: 104 GCIFGKHHKTTFSKEGRWRAYNPLELVHTDVCG-PLKPMT 142
CI+GK H+ FS G+ NPL+ VH+D+ G P P++
Sbjct: 106 DCIYGKTHRVNFST-GQHTTKNPLDYVHSDLWGAPSVPLS 144