BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0370.1
(388 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 1e-13
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 3e-13
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 70 8e-13
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 62 4e-10
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 60 2e-09
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 67.4 bits (163), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 186 FSLLILNGRPKDFLFSKRGLRQRYPLSPYLFVLCSETLTRLVVQVERCKLYNGLKVNKYA 245
+ L I+NG P+ + RGLRQ PLSPYLF+LC+E L+ L + + G++V+ +
Sbjct: 9 YLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNS 68
Query: 246 SCISHLMFADD 256
I+HL+FADD
Sbjct: 69 PRINHLLFADD 79
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 67.4 bits (163), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 278 CASQKD-GVLGIRDMGVVNRSLVRKLTWRFLSEPEALWVKILKAKYLENENFWDHLAKSG 336
C S++D G LG RD+G N++L+ K ++R + +P L ++L+++Y + + + +
Sbjct: 48 CKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTR 107
Query: 337 TTFIWRGILKMRKFVKEGVRYSIGDGNSTRIWEDPWV 373
++ WR I+ R+ + G+ +IGDG T++W D W+
Sbjct: 108 PSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 2 EEIWQVINGMKACKSPGPDGYSAIFYKKSWTVIKEEVTNQIKNIFDSGILPGKLNHTFIS 61
+EI + M K+PGPD ++A F+ +SW V+K+ +K F +G L + N T I+
Sbjct: 534 KEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAIT 593
Query: 62 LIPKVQAPESSVYFSPISLCNVLYRIV 88
LIPKV + F P+S C V+Y+I+
Sbjct: 594 LIPKVTGVDQLSMFRPVSCCTVVYKII 620
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%)
Query: 258 FFFGKTSDYNAEQLKSILETCASQKDGVLGIRDMGVVNRSLVRKLTWRFLSEPEALWVKI 317
F++ + K+ + +G +G +D+ N +L+ K WR LS PE+L K+
Sbjct: 28 FWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKV 87
Query: 318 LKAKYLENENFWDHLAKSGTTFIWRGILKMRKFVKEGVRYSIGDGNSTRIWEDPWV 373
K++Y + + S +F+W+ I ++ +++G R +G+G IW W+
Sbjct: 88 FKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWL 143
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 276 ETCASQKDGVLGIRDMGVVNRSLVRKLTWRFLSEPEALWVKILKAKYLENENFWDHLAKS 335
+ C + +G LGIR + N+ + KL WR LS +LWV+ L+ L +FW + S
Sbjct: 174 DVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFW---SIS 229
Query: 336 GTT----FIWRGILKMRKFVKEGVRYSIGDGNSTRIWEDPW 372
G T ++W+ ILK R V++ I +G++T W D W
Sbjct: 230 GNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270