BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0460.1
(330 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 92 2e-21
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 91.7 bits (226), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 21 NGSIPKPTSPNQLHS-WGRCNDLVSSWIINSIAPDIRSSVLYDESAADIWRNLYERFFQT 79
+G++PKP + L+ W +CN +V W++NS+ + SV+Y E+A +W +L F
Sbjct: 63 DGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPC 122
Query: 80 NAPKIYQLKRAISSFKQEGHDVSSYFTQLKTLQDELQSLMVIDPCICGQ-----GKSLLD 134
KIYQL+R +++ +Q G V YF +L + EL I C CG K +
Sbjct: 123 VDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEE 182
Query: 135 RTNQERAMEFLQG--LHDRFLAIRSQILLMDPFPSILMIHSLVKQEE 179
+E+ EFL G L+ F A+ ++I+ P PS+ ++VK E
Sbjct: 183 AREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229