BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000071.1_g0460.1
         (330 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    92   2e-21

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 91.7 bits (226), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 21  NGSIPKPTSPNQLHS-WGRCNDLVSSWIINSIAPDIRSSVLYDESAADIWRNLYERFFQT 79
           +G++PKP   + L+  W +CN +V  W++NS+   +  SV+Y E+A  +W +L   F   
Sbjct: 63  DGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPC 122

Query: 80  NAPKIYQLKRAISSFKQEGHDVSSYFTQLKTLQDELQSLMVIDPCICGQ-----GKSLLD 134
              KIYQL+R +++ +Q G  V  YF +L  +  EL     I  C CG       K   +
Sbjct: 123 VDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEE 182

Query: 135 RTNQERAMEFLQG--LHDRFLAIRSQILLMDPFPSILMIHSLVKQEE 179
              +E+  EFL G  L+  F A+ ++I+   P PS+    ++VK  E
Sbjct: 183 AREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229


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