BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0530.1
(122 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42905.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 47 4e-07
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 47 8e-07
>AT5G42905.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:17201414-17202323 REVERSE
LENGTH=258 | 201606
Length = 258
Score = 47.4 bits (111), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 26 WKPPPHGRIKVNVDGAYRND--RAAAAAVARDWRGEIIDTEAQRFPPVSSLHSELRGIEL 83
W P G +KVN DGA R + A+A V RD G + S+ H+EL G+
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 84 GFRLAERLGLQSFEMETDSLVLVNLIMDG-RDASPVAI 120
G A + E+E DS +V + G D+ P++
Sbjct: 200 GLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSF 237
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 47.0 bits (110), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 26 WKPPPHGRIKVNVDGAYR--NDRAAAAAVARDWRGEIIDTEAQRFPPVSS-LHSELRGIE 82
W+PPPH +K N D + N+R V R+ +GE+ A+ P + S L +EL +
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 83 LGFRLAERLGLQSFEMETDSLVLVNLI 109
R E+DS VL+ ++
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEIL 506