BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0620.1
(980 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 137 2e-33
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 128 1e-30
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 128 1e-30
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 127 1e-29
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 102 3e-22
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/559 (23%), Positives = 239/559 (42%), Gaps = 41/559 (7%)
Query: 451 TYACSYQVMPKAVANSLEKIERSFWWGHSPSERKLHFINWDTITAPKHKGGLGIRSIVEI 510
TY + ++PK V + + FWW + + +H+ WD ++ K +GG+G + I
Sbjct: 5 TYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAF 64
Query: 511 NSSLIAKMTWNFITKNNEIWVRLLQAKYVKDGDFWSHATSSGSSHLWKALNNTKEIIWDN 570
N +L+ K W +++ + ++ +++Y D + S S +WK+++ ++EI+
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 571 SIWHIHNGVSIKIRSDPWIPNN------NNHNIPADMTNLPQSIVFVSELIMQENLIWNE 624
+ + NG I I W+ + +P SI+ VS+LI + W +
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 625 ELIRGWFSEEDAHNILNITIHTTNSKDELIWCPKENGKFTSKSFY---AEIKVTPELPNQ 681
++I F E + I + D W +G +T KS Y +I P +
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQE 244
Query: 682 VQEFS----WSQFWKMNQAQPKIHNFIWKLIHNGIPVLTNIGARVSYIDQTCRMCGTGDL 737
V E S + + WK +Q PKI +F+WK + N +PV + R + C C +
Sbjct: 245 VSEPSLNPIYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK- 302
Query: 738 ESITHLFGSCSVYQTLLQKAGL--------AHLLHIKTDPIRALDSVIKDKEKREEYWYR 789
E++ HL C+ + + + A +++ + L + EK +
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL--- 359
Query: 790 ITYLMWFWWKTRNEFHFQERQPDLNRCYWNTTEALRYVTIPNPPLTTNLHMQEN-----R 844
+ +L+W WK RNE F+ R+ + + L I + Q N R
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 845 WCPPPEGVLKINFDGSFRESQASCAA--LIRNSDGVT--IASRATLTEPISPMRSEIAAL 900
W PPP +K N D ++ C ++RN G + +RA L + S + +E+ A+
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEAM 478
Query: 901 ELGLTLAEEMNLSSFIIERDARVLLELIVAVNPEIPWRISAQINGIRDRIANRPLDVKYY 960
+ + I E D++VL+E++ N EI + I ++ R+ ++ +VK+
Sbjct: 479 RWAVLSLSRFQYNYVIFESDSQVLIEIL--NNDEIWPSLKPTIQDLQ-RLLSQFTEVKFV 535
Query: 961 --PRIQNQDAHLLAASVLS 977
PR N A +A LS
Sbjct: 536 FIPREGNTLAERVARESLS 554
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 194/453 (42%), Gaps = 43/453 (9%)
Query: 325 ITHLLFADDLIVFGKATQENLNTVMHIMEEYGRFSGQQVNYSKSSLYFSKGVPSNITMQC 384
ITHL FADDL+VF + ++ ++ I ++ FSG Q++ KS++Y + GV N
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 385 VQTLNAPLMTDRDKYLGALVLKKNHRIESYNWLIEKFNKSLAGWKHKFTTQAGRTILIKS 444
+ + +YLG +L K Y L+EK + W + + AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 445 ILSSFCTYACSYQVMPKAVANSLEKIERSFWWGHSPSERKLHFINWDTITAPKHKGGLGI 504
++ S + S +P A ++ I SF W K + W + PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 505 RSIVEINSSLIAKMTWNFITKNNEIWVRLLQAKYVKDGDFWS-HATSSGSSHLWKALNNT 563
RS+ E N + K+ W ++ + +WV+ L+ ++ G FWS ++ S +WK +
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 564 KEIIWDNSIWHIHNGVSIKIRSDPWIPNNNNHNIPADMTNLPQSIVF---VSELIM---- 616
+ + IHNG + D W ++ + I V+E ++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 617 ----QENLIWNEELIRGWFSEEDAHNILNITIHTTNSKDELIWCPKENGK-----FTSKS 667
+ L+ E++I E H L T+ +D + W K NG F +K
Sbjct: 306 RRHRHDTLLRIEDVI-----AEVRHQGL------TSGEDTVRW--KGNGDIFKPCFNTKE 352
Query: 668 FYAEIKVTPELPNQVQEFSWSQFWKMNQAQPKIHNFIWKLIHNGIPVLTNIGARVSYIDQ 727
+A + P+L + W + A PK W I N + + + + D
Sbjct: 353 TWAATR-EPKLKVNWYKGVW-----FSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 728 TCRMCGTGDLESITHLFGSC----SVYQTLLQK 756
+C +C +E+ HLF +C V+ TL +K
Sbjct: 407 SCVLC-HHLVETRDHLFFTCPYSAEVWSTLTRK 438
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 194/453 (42%), Gaps = 43/453 (9%)
Query: 325 ITHLLFADDLIVFGKATQENLNTVMHIMEEYGRFSGQQVNYSKSSLYFSKGVPSNITMQC 384
ITHL FADDL+VF + ++ ++ I ++ FSG Q++ KS++Y + GV N
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 385 VQTLNAPLMTDRDKYLGALVLKKNHRIESYNWLIEKFNKSLAGWKHKFTTQAGRTILIKS 444
+ + +YLG +L K Y L+EK + W + + AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 445 ILSSFCTYACSYQVMPKAVANSLEKIERSFWWGHSPSERKLHFINWDTITAPKHKGGLGI 504
++ S + S +P A ++ I SF W K + W + PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 505 RSIVEINSSLIAKMTWNFITKNNEIWVRLLQAKYVKDGDFWS-HATSSGSSHLWKALNNT 563
RS+ E N + K+ W ++ + +WV+ L+ ++ G FWS ++ S +WK +
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 564 KEIIWDNSIWHIHNGVSIKIRSDPWIPNNNNHNIPADMTNLPQSIVF---VSELIM---- 616
+ + IHNG + D W ++ + I V+E ++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 617 ----QENLIWNEELIRGWFSEEDAHNILNITIHTTNSKDELIWCPKENGK-----FTSKS 667
+ L+ E++I E H L T+ +D + W K NG F +K
Sbjct: 306 RRHRHDTLLRIEDVI-----AEVRHQGL------TSGEDTVRW--KGNGDIFKPCFNTKE 352
Query: 668 FYAEIKVTPELPNQVQEFSWSQFWKMNQAQPKIHNFIWKLIHNGIPVLTNIGARVSYIDQ 727
+A + P+L + W + A PK W I N + + + + D
Sbjct: 353 TWAATR-EPKLKVNWYKGVW-----FSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 728 TCRMCGTGDLESITHLFGSC----SVYQTLLQK 756
+C +C +E+ HLF +C V+ TL +K
Sbjct: 407 SCVLC-HHLVETRDHLFFTCPYSAEVWSTLTRK 438
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/440 (25%), Positives = 190/440 (43%), Gaps = 39/440 (8%)
Query: 325 ITHLLFADDLIVFGKATQENLNTVMHIMEEYGRFSGQQVNYSKSSLYFSKGVPSNITMQC 384
ITHL FADDL+VF + ++ ++ I ++ FSG Q++ KS++Y + GV N
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 385 VQTLNAPLMTDRDKYLGALVLKKNHRIESYNWLIEKFNKSLAGWKHKFTTQAGRTILIKS 444
+ + +YLG +L K Y L+EK + W + + AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 445 ILSSFCTYACSYQVMPKAVANSLEKIERSFWWGHSPSERKLHFINWDTITAPKHKGGLGI 504
++ S + S +P A ++ I SF W K + W + PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 505 RSIVEINSSLIAKMTWNFITKNNEIWVRLLQAKYVKDGDFWS-HATSSGSSHLWKALNNT 563
RS+ E N + K+ W ++ + +WV+ L+ ++ G FWS ++ S +WK +
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 564 KEIIWDNSIWHIHNGVSIKIRSDPWIPNNNNHNIPADMTNLPQSIVF---VSELIM---- 616
+ + IHNG + D W ++ + I V+E ++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 617 ----QENLIWNEELIRGWFSEEDAHNILNITIHTTNSKDELIWCPKENGK-----FTSKS 667
+ L+ E++I E H L T+ +D + W K NG F +K
Sbjct: 306 RRHRHDTLLRIEDVI-----AEVRHQGL------TSGEDTVRW--KGNGDIFKPCFNTKE 352
Query: 668 FYAEIKVTPELPNQVQEFSWSQFWKMNQAQPKIHNFIWKLIHNGIPVLTNIGARVSYIDQ 727
+A + P+L + +W + + A PK W I N + + + + D
Sbjct: 353 TWAATR-EPKL-----KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 728 TCRMCGTGDLESITHLFGSC 747
+C +C +E+ HLF +C
Sbjct: 407 SCVLCHHL-VETRDHLFFTC 425
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 4/186 (2%)
Query: 21 EQRSRVKWVQNGDRNTKAFHIAMSTRRQKNKIHQITLSNGQTTSDLNSISQEFIEHFQNL 80
Q+SR+KW+Q+GD NT+ FH + + KN I + + + ++ + + + ++ +L
Sbjct: 436 RQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHL 495
Query: 81 FKADP---VSDPPTEIINAYKVFSIEQLAD-ISRIPSAEEIKDVVMKMGSIKSPGPDGLP 136
+D D I + + + LA +S +PS +EI V M K+PGPD
Sbjct: 496 LGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFT 555
Query: 137 CYFFQHNWDIVGQGFILYIQSAFSSGLIEPHLNYTTIALIPKTRNPSTASQFRPISLCNS 196
FF +W +V I ++ F +G + N T I LIPK S FRP+S C
Sbjct: 556 AEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTV 615
Query: 197 VYKFIT 202
VYK IT
Sbjct: 616 VYKIIT 621