BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0710.1
(220 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 79 8e-17
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 79 8e-17
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 79 1e-16
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 58 1e-09
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 55 8e-09
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 79.0 bits (193), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 29 IKHLLFADDCIIFGQNSLDNIFNLKQILKEFSEASGQMINYTKSNILFSKNSHPKFKRMI 88
I HL FADD ++F +I + QI +F++ SG I+ KS I + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 89 IRELKVHQSSSGDKYMGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVLST 148
+ + +Y+G L + + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 ITAAVPRYQMQCFALPKGISDNIESIQRTYWWG-------KSKTFHTINWNSIGKPCKHG 201
+ ++ + M F LP I+SI ++ W K+K + W+ + P G
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 202 GLGLRLPQLDNQGFLHKL 219
GLG+R + N+ L KL
Sbjct: 183 GLGIRSLKEANKVSLLKL 200
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 79.0 bits (193), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 29 IKHLLFADDCIIFGQNSLDNIFNLKQILKEFSEASGQMINYTKSNILFSKNSHPKFKRMI 88
I HL FADD ++F +I + QI +F++ SG I+ KS I + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 89 IRELKVHQSSSGDKYMGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVLST 148
+ + +Y+G L + + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 ITAAVPRYQMQCFALPKGISDNIESIQRTYWWG-------KSKTFHTINWNSIGKPCKHG 201
+ ++ + M F LP I+SI ++ W K+K + W+ + P G
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 202 GLGLRLPQLDNQGFLHKL 219
GLG+R + N+ L KL
Sbjct: 183 GLGIRSLKEANKVSLLKL 200
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 79.0 bits (193), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 29 IKHLLFADDCIIFGQNSLDNIFNLKQILKEFSEASGQMINYTKSNILFSKNSHPKFKRMI 88
I HL FADD ++F +I + QI +F++ SG I+ KS I + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 89 IRELKVHQSSSGDKYMGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVLST 148
+ + +Y+G L + + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 ITAAVPRYQMQCFALPKGISDNIESIQRTYWWG-------KSKTFHTINWNSIGKPCKHG 201
+ ++ + M F LP I+SI ++ W K+K + W+ + P G
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 202 GLGLRLPQLDNQGFLHKL 219
GLG+R + N+ L KL
Sbjct: 183 GLGIRSLKEANKVSLLKL 200
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 102 KYMGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVLSTITAAVPRYQMQCF 161
+Y+G L + + L+ +I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 162 ALPKGISDNIESIQRTYWWGKSK---TFHTINWNSIGKPCKHGGLGLRLPQLDNQG 214
LP I+SI ++ W + + W+ + P GGLG+R + N+G
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG 141
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 102 KYMGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVLSTITAAVPRYQMQCF 161
+Y+G L + + L+ +I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 162 ALPKGISDNIESIQRTYWWG-------KSKTFHTINWNSIGKPCKHGGLGLRLPQLDNQG 214
LP I+SI ++ W K+K + W+ + P GGLG+R + N+
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEGGLGIRSLKEANKV 141
Query: 215 FLHKL 219
L KL
Sbjct: 142 SLLKL 146