BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000071.1_g0730.1
         (198 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240...    65   1e-12
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    58   8e-10

>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
           Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
          Length = 308

 Score = 65.5 bits (158), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 20/155 (12%)

Query: 47  KKQNNARKSQLILQLQTIQKNNLPMVEYVGKIKETFNAISASHAPVPDIELVLHTLRGLG 106
           +   +AR  +L  +L+T    ++ + +Y  K+K+  +++     PV D  LV++ L GL 
Sbjct: 107 RNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLN 166

Query: 107 PDYSSFVTAIKTRENLPTFTQLQPLLFTQEIKF--------THQQSISYSSTALIAKTSS 158
           P + + +  IK R+  P+F     +L  +E +         TH    S SST L    + 
Sbjct: 167 PKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSS-SSTVLACSEAP 225

Query: 159 PVSSPKPQFRQQRGGG-----RGGGRANQRGRGRG 188
           PV++       QR GG     RG GR N   RGRG
Sbjct: 226 PVTN------FQRSGGNQMGYRGRGRGNNIFRGRG 254


>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 57.8 bits (138), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 47  KKQNNARKSQLILQLQTIQKNNLPMVEYVGKIKETFNAISASHAPVPDIELVLHTLRGLG 106
           +    AR  Q   +L+T   ++L + EY  K+K   + ++   +P+ D  LV+H L GL 
Sbjct: 109 RDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLT 168

Query: 107 PDYSSFVTAIKTRENLPTFTQLQPLLFTQEIKFTHQQSISYSSTALIAKTSSPVSSPK-- 164
             Y   +  IK +   P+FT+ + +L  +E + +++   S S T   + ++   + P+  
Sbjct: 169 EKYDYILNVIKHKSPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQ 228

Query: 165 ---PQFRQQRGGGRGGGRANQRGRGRGRSQNQ 193
              PQ         G GR+ ++ RG G S  +
Sbjct: 229 ERYPQEYHNNNSNMGRGRSKKKNRGGGSSDGR 260

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