BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0830.1
(240 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN... 47 1e-06
AT2G15180.1 | Zinc knuckle (CCHC-type) family protein | Chr2:658... 45 3e-05
>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
LENGTH=110 | 201606
Length = 110
Score = 46.6 bits (109), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 194 AAVWWDQLQRQRVGQGRAPIQNWPSMKENLRERFLPPDY 232
AA WW Q Q+ R G+ PI++W +KE L + FLPP Y
Sbjct: 2 AASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHY 40
>AT2G15180.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:6588743-6590167 REVERSE LENGTH=474 | 201606
Length = 474
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 125 RGNYYPNQLYPRRYYDEYKIKEEIPLFNGYLSV--EEFL-DWLHEVERQVNMSY-----T 176
+ N+YP YP R K+ ++ + NG + E FL L ++ + NM+Y +
Sbjct: 81 KTNFYPT-FYPTR-----KVIYKLFVHNGSKTYGPEFFLFSGLGYLQWESNMNYYFEFHS 134
Query: 177 VPGEQMVNIIACKLKGSAAVWWDQLQRQRVGQGRAPIQNWPSMKENLRERFLP 229
E ++I +LKGSA WWDQ + R + RAPI+ W +K N+ ++ P
Sbjct: 135 TAQEDKLSIALGQLKGSALWWWDQDEYNRWYERRAPIRTWERLKWNMCAKYSP 187