BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0850.1
(636 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801... 100 5e-25
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 63 4e-10
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 55 1e-08
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C... 48 2e-05
>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
Length = 97
Score = 100 bits (248), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 2 SNMIQPQIPRLTKENYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVRKCVLK 61
SN + Q+P LTK NY++W ++M +LG+ D+W+IV+ G++EP E E ++ +K L+
Sbjct: 3 SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLR 60
Query: 62 DSRKMDKKALFLIYQGIDGPTFEKVSEAKSSKEA 95
DSRK DKKAL LIYQG+D TFEKV EA S+K+
Sbjct: 61 DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKDG 94
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 7/198 (3%)
Query: 16 NYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVRKCVLKDSRKM---DKKALF 72
+YE W L Q LWD+V NG + + ++ L R D KAL
Sbjct: 16 DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75
Query: 73 LIYQGIDGPTFEKVSEAKSSKEAWNILK--NSFRGVDKVVKVRLQILRGEFERLSMNEGE 130
++ + F K A S+K+ W++L+ N + ++ +V ++ L + E L M + E
Sbjct: 76 ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135
Query: 131 LVSDYVSRVLSNVNEMKRCGEKCDDVRVMEKILRSLTPKFDNVVIVVEESKDLEAMTVDE 190
S Y+ + L + + R + D + + + +L+ FD + ++EE D+ MT
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195
Query: 191 LMGTL--QIHEQRVNRSV 206
L+ ++HE ++
Sbjct: 196 LVEYFYYRVHESSTEEAI 213
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 292 CYNCHKLGHYSNECWYKNEVKEESNLVEDEVEINVDPTLLFSCD-GLDELQTNTWYFDTG 350
C C+K H +C ++ +E E E EI VD L + G + W
Sbjct: 230 CGLCYKNNHNQEDCKFRIHTDKE----EKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKM 285
Query: 351 ASNHICGKRELFVEVNESVKGCVKFGDSSKIPVLGKGNILIQLKNGKHNYIFDVYYVPAM 410
A ++ + F ++ + K V D + + V GKG++ I++K GK I +V +VP +
Sbjct: 286 APINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGL 345
Query: 411 KNNILSLGQLLEKGYDI 427
N+LS G+++ K Y I
Sbjct: 346 NRNVLSFGKMVSKRYSI 362
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 467 LNSIVKDESWLWHLRLGHLNFDGMKTLASKNMVRGLPCIDHPNKVCEGCIFGKHHRTSFS 526
L KDE+ LWH RL H++ GM+ L K + K CE CI+GK HR +FS
Sbjct: 61 LAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSS--LKFCEDCIYGKTHRVNFS 118
Query: 527 KEGRWRASNILELVHTDGCG-PLKPMT 552
G+ N L+ VH+D G P P++
Sbjct: 119 T-GQHTTKNPLDYVHSDLWGAPSVPLS 144
>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
Length = 405
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 16 NYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVRK---CVLKDSRKMDKKALF 72
NYE W M L + LWDIV+ G + +R + +DS D KAL
Sbjct: 18 NYEIWAPIMKTSLAEKGLWDIVKYGIPPDLSKIPELATKIRTQDLSIYRDSAVKDTKALH 77
Query: 73 LIYQGIDGPTFEKVSEAKSSKEAWNILKNSF 103
L+ + F K E S+K W+++K +
Sbjct: 78 LLQSFLPDSVFRKTLETTSAKHLWDLVKEDY 108