BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0880.1
(1174 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 237 5e-64
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 237 5e-64
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 116 9e-29
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 72 4e-14
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 60 1e-10
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 237 bits (605), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 245/487 (50%), Gaps = 34/487 (6%)
Query: 638 EPHSIEECRKRTDWVQLKEAIQTELNSLSKRNVFGHVVLTPNDVNPVGFKWVFVRKRNEN 697
EP + E ++ W A+ E+ ++ + + L PN P+G KWV+ K N +
Sbjct: 85 EPSTYNEAKEFLVWCG---AMDDEIGAMETTHTWEICTLPPNK-KPIGCKWVYKIKYNSD 140
Query: 698 NEVIRYKARLVAQGFLQKPGIDYEETYSPVMDGITFRYLISLAVLEELEMNLMDVVTAYP 757
+ RYKARLVA+G+ Q+ GID+ ET+SPV + + +++++ + ++ +D+ A+
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 758 YGKLDTDIYMKVPEGFKLHGGK---PRTMYSLKLNRALYGLKQAGRMWYNCLSEYLIKEG 814
G LD +IYMK+P G+ G P + LK +++YGLKQA R W+ S LI G
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 815 YVNDLVCPCLFIKKGDVGFAILAVYVDDINLIGTPE-ELSKAAEYLKKEFEMKDLGKTKF 873
+V F+K F + VYVDDI + + + + LK F+++DLG K+
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 874 YLGLQIERSTSGILVHQTLYTEKVLKRFNIENSYPLSTPM---VVRSLDALKDPFRPKEE 930
+LGL+I RS +GI + Q Y +L + P S PM V S + D K
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 376
Query: 931 DETLLGPEVPYMSAIGALSYLAQCTRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRG 990
Y IG L YL Q TR DI+FAVN L+++S AP H V +IL Y++G
Sbjct: 377 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 426
Query: 991 TTDMGLFYSKNLSGDSQVKGYTNADYIYDPHKGISQTGYVFTSGGTTFSWRSSKQSMPAT 1050
T GLFYS + Q++ +++A + S GY G + SW+S KQ + +
Sbjct: 427 TVGQGLFYSSQ--AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 1051 SSNHAEIIALHEATRECVWLRSIIEHIRSSSGLDSITKSPTVIHEDNSACIAQIREGYIK 1110
SS AE AL AT E +WL ++ PT++ DN+A I I +
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLP------LSKPTLLFCDNTAAI-HIATNAVF 537
Query: 1111 GDRTKHI 1117
+RTKHI
Sbjct: 538 HERTKHI 544
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 237 bits (605), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 245/487 (50%), Gaps = 34/487 (6%)
Query: 638 EPHSIEECRKRTDWVQLKEAIQTELNSLSKRNVFGHVVLTPNDVNPVGFKWVFVRKRNEN 697
EP + E ++ W A+ E+ ++ + + L PN P+G KWV+ K N +
Sbjct: 85 EPSTYNEAKEFLVWCG---AMDDEIGAMETTHTWEICTLPPNK-KPIGCKWVYKIKYNSD 140
Query: 698 NEVIRYKARLVAQGFLQKPGIDYEETYSPVMDGITFRYLISLAVLEELEMNLMDVVTAYP 757
+ RYKARLVA+G+ Q+ GID+ ET+SPV + + +++++ + ++ +D+ A+
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 758 YGKLDTDIYMKVPEGFKLHGGK---PRTMYSLKLNRALYGLKQAGRMWYNCLSEYLIKEG 814
G LD +IYMK+P G+ G P + LK +++YGLKQA R W+ S LI G
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 815 YVNDLVCPCLFIKKGDVGFAILAVYVDDINLIGTPE-ELSKAAEYLKKEFEMKDLGKTKF 873
+V F+K F + VYVDDI + + + + LK F+++DLG K+
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 874 YLGLQIERSTSGILVHQTLYTEKVLKRFNIENSYPLSTPM---VVRSLDALKDPFRPKEE 930
+LGL+I RS +GI + Q Y +L + P S PM V S + D K
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 376
Query: 931 DETLLGPEVPYMSAIGALSYLAQCTRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRG 990
Y IG L YL Q TR DI+FAVN L+++S AP H V +IL Y++G
Sbjct: 377 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 426
Query: 991 TTDMGLFYSKNLSGDSQVKGYTNADYIYDPHKGISQTGYVFTSGGTTFSWRSSKQSMPAT 1050
T GLFYS + Q++ +++A + S GY G + SW+S KQ + +
Sbjct: 427 TVGQGLFYSSQ--AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 1051 SSNHAEIIALHEATRECVWLRSIIEHIRSSSGLDSITKSPTVIHEDNSACIAQIREGYIK 1110
SS AE AL AT E +WL ++ PT++ DN+A I I +
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLP------LSKPTLLFCDNTAAI-HIATNAVF 537
Query: 1111 GDRTKHI 1117
+RTKHI
Sbjct: 538 HERTKHI 544
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 116 bits (291), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 13/235 (5%)
Query: 836 LAVYVDDINLIGTPEELSKAAEY-LKKEFEMKDLGKTKFYLGLQIERSTSGILVHQTLYT 894
L +YVDDI L G+ L + L F MKDLG ++LG+QI+ SG+ + QT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 895 EKVLKRFNIENSYPLSTPMVVRSLDALKDPFRPKEEDETLLGPEVPYMSAIGALSYLAQC 954
E++L + + P+STP+ ++ ++ P D + S +GAL YL
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD---------FRSIVGALQYLT-L 112
Query: 955 TRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRGTTDMGLFYSKNLSGDSQVKGYTNA 1014
TRPDI++AVN++ + PT + +K++LRY++GT GL+ KN V+ + ++
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN--SKLNVQAFCDS 170
Query: 1015 DYIYDPHKGISQTGYVFTSGGTTFSWRSSKQSMPATSSNHAEIIALHEATRECVW 1069
D+ S TG+ G SW + +Q + SS E AL E W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 631 ITENDDYEPHSIEECRKRTDWVQLKEAIQTELNSLSKRNVFGHVVLTPNDVNPVGFKWVF 690
IT EP S+ K W Q A+Q EL++LS RN +V P + N +G KWVF
Sbjct: 20 ITTTIKKEPKSVIFALKDPGWCQ---AMQEELDALS-RNKTWILVPPPVNQNILGCKWVF 75
Query: 691 VRKRNENNEVIRYKARLVAQGFLQKPGIDYEETYSPVMDGITFRYLISLAVLEELEM 747
K + + + R KARLVA+GF Q+ GI + ETYSPV+ T R ++++A ++LE+
Sbjct: 76 KTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA--QQLEV 130
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 60.5 bits (145), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 955 TRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRGTTDMGLFYSKNLSGDSQVKGYTNA 1014
TRPD+ FAVN L+++SSA V ++L Y++GT GLFYS + D Q+K + ++
Sbjct: 6 TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSA--TSDLQLKAFADS 63
Query: 1015 DYIYDPHKGISQTGY 1029
D+ P S TG+
Sbjct: 64 DWASCPDTRRSVTGF 78