BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0920.1
(244 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 71 6e-14
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 58 1e-09
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 57 3e-09
AT3G26855.1 | RNA-directed DNA polymerase (reverse transcriptase... 51 1e-07
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 52 1e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 9 INNGTHISIWHDFWIPNHP----------PSITNQNNSNLNWVAQLI--TNNTWNINLIN 56
+ NG I IW W+ + P P + S++ V+ LI + W ++I
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 57 NCFDSDTCNTILSINLQTYE-EDTAKWTFTKSGNFSTKSMY---------------LSTS 100
F I + D+ W +T SG+++ KS Y +S
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 101 SNGPMQDHNDWFFIWNLNTVPRIKLFLWKCCTNSLPVKDKTG-RYIENNYSCINCNG-DE 158
S P+ IW T P+I+ FLWKC +NSLPV R++ +CI C E
Sbjct: 249 SLNPIYQK-----IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKE 303
Query: 159 TLDHVMLHCNYARAIW 174
T++H++ C +AR W
Sbjct: 304 TVNHLLFKCTFARLTW 319
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 120 VPRIKLFLWKCCTNSLPVKDK-TGRYIENNYSCINCNGDETLDHVMLHCNYARAIW 174
+P+IKLFLWK +LPV + R+I + + C C ET H++ HC++A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW 56
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 114 IWNLNTVPRIKLFLWKCCTNSLPVKDK-TGRYIENNYSCIN-CNGDETLDHVMLHCNYAR 171
IW L T P+IK FLWK + +L D R+I N+ C C DET H+ C YA+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 172 AIWFNFQVRSEQLSTSRQVISQFLEL 197
+W + ++L T+ + +EL
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMEL 103
>AT3G26855.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9898680-9899350 REVERSE LENGTH=163 | 201606
Length = 163
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 109 NDWFF-IWNLNTVPRIKLFLWKCCTNSLPVKDK-TGRYIENNYSCINCNGDETLDHVMLH 166
N+W IW+L P+IKL +WK N+LPV + R I C C ET+ H++ +
Sbjct: 3 NNWIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFN 62
Query: 167 CNYA-RAIWFNFQVRSEQLSTSRQVISQFLELKNQFTDIIFSYDHR-ECNA 215
C +A R + + +++ T++Q+ S + F I +D R CN
Sbjct: 63 CPFAQREVIMKSIIDAKEWQTAQQMGSMLGSTPSLFPRI---HDERTPCNP 110
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 9 INNGTHISIWHDFWIPNHPPSITNQNNSNLNWVAQLITNNT---------WNINLINNCF 59
I +G +I I D + +HPP N + ++ NN W+ + I+
Sbjct: 42 IGDGQNIRIGLDNIVDSHPPRPLNTEET----YKEMTINNLFERKGSYYFWDDSKISQFV 97
Query: 60 DSDTCNTILSINL-QTYEEDTAKWTFTKSGNFSTKSMY-LST--------SSNGPMQDHN 109
D I I L ++ + D W + +G ++ +S Y L T + N P +
Sbjct: 98 DQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSID 157
Query: 110 DWFFIWNLNTVPRIKLFLWKCCTNSLPVKDK-TGRYIENNYSCINCNGD-ETLDHVMLHC 167
IWNL +P++K FLW+ + +L ++ T R + + SC C+ + E+++H + C
Sbjct: 158 LKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTC 217
Query: 168 NYARAIW 174
+A W
Sbjct: 218 PFATMAW 224