BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g1010.1
(354 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53670.1 | transmembrane protein | Chr5:21796997-21797731 FOR... 97 4e-23
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 54 7e-08
>AT5G53670.1 | transmembrane protein | Chr5:21796997-21797731
FORWARD LENGTH=244 | 201606
Length = 244
Score = 97.1 bits (240), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 115/217 (52%), Gaps = 26/217 (11%)
Query: 1 MNDTSRIPILCGDNFSDWKDSVLFTLGCMDLDLALRVDAPPIPTESSTPQERLDYERWER 60
+++ IP+L G NFS+WK+ +L L MDLDL+L + P P E + W+R
Sbjct: 32 LSNVDSIPMLSGSNFSEWKEHLLLVLALMDLDLSLMTERPSSPKE---------LKHWDR 82
Query: 61 SNRLSLMLIKSRVNKSIRGSIP-DCPHAKDFLKTVEEQFVRSDKAQASTLMKRLSDKTFD 119
SNR+S+M++K R+ + RG +P D AKDFL ++E F ++++A+ S + S ++
Sbjct: 83 SNRVSIMIMKIRIPQGFRGVVPDDVTTAKDFLASLENFFAKNEEAERSRVQAESSSMSYI 142
Query: 120 YSKGVREHIMGMRDIAAQLKPLKVE---IHESFLVHLVLNSLPKEYGPFKISYNIHK--- 173
++ VRE IM M+ + A+ K L + ++ L H + LP +Y K Y+ +
Sbjct: 143 ENENVRELIMRMKTLGAKRKRLGINNIFSNDMMLAHCAVKMLPLQYISLKNVYSCLEGKF 202
Query: 174 ----------ENWSINELLTMCVQEEERMKHEKLESA 200
E WS EL++ C EEE ++ E + A
Sbjct: 203 VNENGRWHTGEIWSTKELISRCDMEEETLRTEIADEA 239
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 20/264 (7%)
Query: 2 NDTSRIPILCG---DNFSDWKDSVLFTLGCMDLDLALRVDAPPIPTESSTPQERLDYERW 58
N S IP++ N+ W++ LF C+ D+ +D +PT ++ D
Sbjct: 15 NIKSHIPVMLDIEESNYDAWRE--LFLTHCLSFDVMGHIDGTLLPTNAN------DVNWQ 66
Query: 59 ERSNRLSLMLIKSRVNKSIRGSIPDCPHAKDFLKTVEEQFVRSDKAQASTLMKRLSDKTF 118
+R + L L + K +GS ++D ++ QF + A+A L L K
Sbjct: 67 KRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDI 126
Query: 119 DYSKGVREHIMGMRDIAAQLKPLKVEIHESFLVHLVLNSLPKEYGPFKISYNIHKENW-S 177
+ V ++ M+ +A L+ + V + + LV VLN L ++ I+ H++ + S
Sbjct: 127 GDMR-VADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNI-INVIKHRQPFPS 184
Query: 178 INELLTMCVQEEERMKHEKLESAHFVSHDKGST----KKRKHVQNVQ--NKETMPLKNHG 231
++ TM +EE+R+K + V H ST + V N Q M + G
Sbjct: 185 FDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRG 244
Query: 232 KLVKCFFCRKAGLEKKDCLKYKNW 255
+ F R + + +W
Sbjct: 245 RGNNIFRGRGGRFSYYNMPTFNSW 268