BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g1130.1
(160 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 108 5e-28
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 108 7e-28
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 108 7e-28
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 70 2e-14
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 69 3e-14
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 108 bits (271), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 29 VTHLCFADDLMVFFRVDASSAQSLKGLLTGFHQATGLQANVHKSTIFFACLSAQGQSDIT 88
+THLCFADDL+VF SS + + + F +GLQ ++ KSTI+ A + ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 89 TILKFGDSSLPVRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGRVLLIKVI 148
F +LPVRYLGLPL++ ++T S PL++KI+ RI W +R LSFAGR+ LI +
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 149 LNSI 152
++S+
Sbjct: 128 IHSL 131
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (269), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 29 VTHLCFADDLMVFFRVDASSAQSLKGLLTGFHQATGLQANVHKSTIFFACLSAQGQSDIT 88
+THLCFADDL+VF SS + + + F +GLQ ++ KSTI+ A + ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 89 TILKFGDSSLPVRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGRVLLIKVI 148
F +LPVRYLGLPL++ ++T S PL++KI+ RI W +R LSFAGR+ LI +
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 149 LNSI 152
++S+
Sbjct: 128 IHSL 131
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (269), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 29 VTHLCFADDLMVFFRVDASSAQSLKGLLTGFHQATGLQANVHKSTIFFACLSAQGQSDIT 88
+THLCFADDL+VF SS + + + F +GLQ ++ KSTI+ A + ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 89 TILKFGDSSLPVRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGRVLLIKVI 148
F +LPVRYLGLPL++ ++T S PL++KI+ RI W +R LSFAGR+ LI +
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 149 LNSI 152
++S+
Sbjct: 128 IHSL 131
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 70.1 bits (170), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 76 FACLSAQGQSDITTILKFGDSSLPVRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 135
A + ++DI F +LPVRYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 136 LSFAGRVLLIKVILNSI 152
LSFAGR+ LI +++S+
Sbjct: 61 LSFAGRLQLISSVIHSL 77
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 69.3 bits (168), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 76 FACLSAQGQSDITTILKFGDSSLPVRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 135
A + ++DI F +LPVRYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 136 LSFAGRVLLIKVILNSI 152
LSFAGR+ LI +++S+
Sbjct: 61 LSFAGRLQLISSVIHSL 77