BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g1160.1
(909 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 193 3e-52
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 105 1e-23
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 103 2e-23
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 100 8e-22
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 100 1e-21
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 193 bits (490), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 151/558 (27%), Positives = 252/558 (45%), Gaps = 57/558 (10%)
Query: 379 AVPRYQMQCFAIPKGISNSIESIQRTFWW---GKSKTLHTINWNSICKPRKFGGLGLRLP 435
A+P Y M CF +PK + I S+ FWW ++K +H W+ + + GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 436 CLDNQAFLHKLNWRIINSPKAIWVQVLKGKYFHNSNKPKPP-KNHHSWPWKSIAKLYDQC 494
N A L K WR+++ P+++ +V K +YFH S+ P + S+ WKSI +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 495 ENLIFWNINKGEKINIWTDYWIPTHP----------PPITNDRGCSLNWVSQLI--TNGN 542
+ GE I IW W+ + P PP S+ VS LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 543 WNLNVINMFFNDDICRAILSINLNPNEE---DKAIWTLTKSGNFTIKSMYNYL------R 593
W +VI M F ++ R ++ L P D W T SG++T+KS Y L R
Sbjct: 182 WRKDVIEMLF-PEVERKLIG-ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 594 NNSIFNTYDQMDWFF--IWNMNTIPRIKLFLWKCCTNSLPVRHKIG-KFIGNNYSCIYCN 650
++ + ++ + IW T P+I+ FLWKC +NSLPV + + + +CI C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 651 E-EETIDHVMLHCNFAKAVWFYYNVR-------TDHIDTIMQWI-------PLWKSLDED 695
+ET++H++ C FA+ W ++ D I + W+ P W E
Sbjct: 300 SCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EK 355
Query: 696 TITLYAKILWLLWKTRCENCFTTNTQDPAQTIERINNTSTT---PLKPVQGITNKSTDVT 752
L +LW LWK R E F + + + R + + T + +
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRS 415
Query: 753 DVQTWKPPRAPYIKINVDASFMNLSERAGIGYIMRDAGAKI-LMAVADTVRGQNAEECEC 811
W+PP ++K N DA++ +ER GIG+++R+ ++ M + ++ E E
Sbjct: 416 SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAEL 475
Query: 812 LAILHGLLGARQQQIEYVHLESDNKSIIQAINGDEGKTQWQSQDIILQ-IKNIKGIFAGI 870
A+ +L + Q YV ESD++ +I+ +N DE W S +Q ++ + F +
Sbjct: 476 EAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFTEV 532
Query: 871 NFTYVSRNGNGYADALAK 888
F ++ R GN A+ +A+
Sbjct: 533 KFVFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/488 (24%), Positives = 199/488 (40%), Gaps = 60/488 (12%)
Query: 462 LKGKYFHN-SNKPKPPKNHHSWPWKS----IAKLYDQCENLIFWNINKGEKINIWTDYWI 516
+K +YF + S + S+ W S IA L +LI G+ I I D +
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLI----GDGQNIRIGLDNIV 56
Query: 517 PTHPP-PITNDRGCSLNWVSQLITNGN----WNLNVINMFFNDDICRAILSINLNPNEE- 570
+HPP P+ + ++ L W+ + I+ F + I I L +++
Sbjct: 57 DSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKP 116
Query: 571 DKAIWTLTKSGNFTIKSMYNYLRNNSIFNT------YDQMDW-FFIWNMNTIPRIKLFLW 623
DK IW +G +T++S Y L ++ N + +D IWN+ +P++K FLW
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 176
Query: 624 KCCTNSLPVRHKIG-KFIGNNYSCIYCNEE-ETIDHVMLHCNFAKAVW-----------F 670
+ + +L ++ + + + SC C+ E E+I+H + C FA W
Sbjct: 177 RALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQL 236
Query: 671 YYNVRTDHIDTIMQWIPLWKSLDEDTITLYAKIL-----WLLWKTRCENCFTTNTQDPAQ 725
N ++I I+ ++ + T++ + K+L W +WK R F + P++
Sbjct: 237 MSNDFEENISNILNFV------QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSK 290
Query: 726 TIERINNTSTTPLKPVQGITNKSTDVTDVQT----WKPPRAPYIKINVDASFMNLSERAG 781
T+ + L Q + + W+ P A Y+K N DA F A
Sbjct: 291 TVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEAT 350
Query: 782 IGYIMRD-AGAKILMAVADTVRGQNAEECECLAILHGLLGARQQQIEYVHLESDNKSIIQ 840
G+I+R+ G I N E E A+L L + V +E D +++I
Sbjct: 351 GGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLIN 410
Query: 841 AINGDEGKTQWQSQDIILQIKNIKGIFAGINFTYVSRNGNGYADALAKWGRTH------- 893
ING + + + I FA I F ++ R GN A LAK+G T+
Sbjct: 411 LINGISFHSSLANH--LEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGS 468
Query: 894 GCKKIWSD 901
G IW D
Sbjct: 469 GSLPIWLD 476
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 24/301 (7%)
Query: 609 IWNMNTIPRIKLFLWKCCTNSLPVRHKI-GKFIGNNYSCIYCN-EEETIDHVMLHCNFAK 666
IW ++ P+IK FLW+C T +L ++ + I + C C EEETI H+M +C + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 667 AVWFYYNV--------RTDHIDTIMQWIPLWKSLDEDTITLYAK--ILWLLWKTRCENCF 716
+VW N+ + D + + I L K+ +++ + I+W LWK+R F
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLF 156
Query: 717 TTNTQDP--------AQTIERINNTSTTPLKPVQGITNK-STDVTDVQTWKPPRAPYIKI 767
Q P E +N TT V TN T D W PP ++K
Sbjct: 157 QQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKC 216
Query: 768 NVDASFMNLSERAGIGYIMRDAGAKILMAVADTVRGQNAE-ECECLAILHGLLGARQQQI 826
N D+ + S G+ +R+ I++ ++ E L LH L +
Sbjct: 217 NFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGL 276
Query: 827 EYVHLESDNKSIIQAINGDEGKTQWQSQDIILQIKNIKGIFAGINFTYVSRNGNGYADAL 886
YV ESD+KS++ IN E + + +I I++ + +V+R N ADAL
Sbjct: 277 RYVWFESDSKSLVTLINNGEDHSLLGT--LIYDIRHWMLKLPYCSLEFVNRERNSAADAL 334
Query: 887 A 887
A
Sbjct: 335 A 335
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 44/369 (11%)
Query: 329 KYLGTNLFIDRNKKQAFNSLVTQIKNKLAKWQTHLLSQAGRSVVISTIVAAVPRYQMQCF 388
+YLG L + + LV +I+ ++ KW LS AGR +IS+++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 389 AIPKGISNSIESIQRTFWWGKSKTLHT----INWNSICKPRKFGGLGLRLPCLDNQAFLH 444
+P I+SI +F W + L+T + W+ +C P+ GGLG+R N+ L
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLL 144
Query: 445 KLNWRIINSPKAIWVQVL------KGKYFHNSNKPKPPKNHHSWPWKSIAKLYDQCENLI 498
KL WR+++S ++WVQ L KG ++ S SW WK I K +
Sbjct: 145 KLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFV 199
Query: 499 FWNINKGEKINIWTDYWIPT-HPPPITNDRGC-----SLNW-VSQLITNGNWNLNVINMF 551
+I+ G + W D W +T RGC +L+ V++ + N + +
Sbjct: 200 KHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTL 259
Query: 552 FN-DDICRAILSINLNPNEEDKAIWTLTKSGN-------FTIKSMYNYLRNNSIFNTYDQ 603
+D+ + L E+ T+ GN F K + R + +
Sbjct: 260 LRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKETWAATREPKL-----K 309
Query: 604 MDWF-FIWNMNTIPRIKLFLWKCCTNSLPVRHKIGKF-IGNNYSCIYCNE-EETIDHVML 660
++W+ +W + P+ + W N L ++ + G + SC+ C+ ET DH+
Sbjct: 310 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 369
Query: 661 HCNFAKAVW 669
C ++ VW
Sbjct: 370 TCPYSAEVW 378
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 44/369 (11%)
Query: 329 KYLGTNLFIDRNKKQAFNSLVTQIKNKLAKWQTHLLSQAGRSVVISTIVAAVPRYQMQCF 388
+YLG L + + LV +I+ ++ KW LS AGR +IS+++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 389 AIPKGISNSIESIQRTFWWGKSKTLHT----INWNSICKPRKFGGLGLRLPCLDNQAFLH 444
+P I+SI +F W + L+T + W+ +C P+ GGLG+R N+ L
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLL 198
Query: 445 KLNWRIINSPKAIWVQVL------KGKYFHNSNKPKPPKNHHSWPWKSIAKLYDQCENLI 498
KL WR+++S ++WVQ L KG ++ S SW WK I K +
Sbjct: 199 KLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFV 253
Query: 499 FWNINKGEKINIWTDYWIPT-HPPPITNDRGC-----SLNW-VSQLITNGNWNLNVINMF 551
+I+ G + W D W +T RGC +L+ V++ + N + +
Sbjct: 254 KHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTL 313
Query: 552 FN-DDICRAILSINLNPNEEDKAIWTLTKSGN-------FTIKSMYNYLRNNSIFNTYDQ 603
+D+ + L E+ T+ GN F K + R + +
Sbjct: 314 LRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKETWAATREPKL-----K 363
Query: 604 MDWF-FIWNMNTIPRIKLFLWKCCTNSLPVRHKIGKF-IGNNYSCIYCNE-EETIDHVML 660
++W+ +W + P+ + W N L ++ + G + SC+ C+ ET DH+
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 661 HCNFAKAVW 669
C ++ VW
Sbjct: 424 TCPYSAEVW 432