BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g1170.1
(265 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21350.1 | RNA-binding CRS1 / YhbY (CRM) domain protein | Chr... 158 1e-47
AT4G39040.2 | RNA-binding CRS1 / YhbY (CRM) domain protein | Chr... 139 8e-40
AT4G39040.1 | RNA-binding CRS1 / YhbY (CRM) domain protein | Chr... 140 1e-39
AT4G29750.2 | CRS1 / YhbY (CRM) domain-containing protein | Chr4... 45 5e-05
AT4G29750.1 | CRS1 / YhbY (CRM) domain-containing protein | Chr4... 45 6e-05
>AT2G21350.1 | RNA-binding CRS1 / YhbY (CRM) domain protein |
Chr2:9136451-9137267 REVERSE LENGTH=222 | 201606
Length = 222
Score = 158 bits (399), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 142/244 (58%), Gaps = 50/244 (20%)
Query: 6 HLLHHLLS-KTPTSSSSIFLKPF-------------YITTALHLHKPFRTIKTSPLSLPS 51
+L+HHLL + PTS +FL+PF +I+++L L +P+ I SPL +P
Sbjct: 11 NLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISSSLPLPRPY--ISFSPLLVPK 68
Query: 52 SPLSLFLNSSSSSSSCLSHTLAISPRVLLNEDTEFDLHTEDEFEEEG--DGEEEEEVIDE 109
S F + S +ED + + +E ++G DG E V
Sbjct: 69 S----FSSVDESEQ---------------DEDNVSLVASLNEINDDGQEDGSELTMVSMR 109
Query: 110 EIKSADSSSSTINGNSALEIPSLSVKEKKELASYAHSLGKKLKAQQVGKSGVTSSLAAAF 169
E + + SALE LS KEK++LASYAH LG KLK+Q VGKSGVT S+ +F
Sbjct: 110 ENRRS----------SALE---LSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSF 156
Query: 170 VENLESNELLKLKIHNSCPGEFADVVKQLEETTGSVAVGQIGRSVILYRPSLTKLKAAEK 229
VE LE NELLK+KIH +CPGE D++ +LEE TGSV+VGQI R+VILYRPS TKLKA E
Sbjct: 157 VETLEKNELLKVKIHRTCPGELEDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADED 216
Query: 230 KKQH 233
KK++
Sbjct: 217 KKRN 220
>AT4G39040.2 | RNA-binding CRS1 / YhbY (CRM) domain protein |
Chr4:18189292-18190535 REVERSE LENGTH=280 | 201606
Length = 280
Score = 139 bits (351), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 133/239 (55%), Gaps = 23/239 (9%)
Query: 2 AASVHLLHHLLS-KTPTSSSSIFLKPFYITTAL----HLHKP-FRTIKTSPLSLPSSPLS 55
+S HL+H+LL P S +FL+PF + ++ H +KP F++ + PL P S
Sbjct: 10 CSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFSSKPL--PCHSAS 67
Query: 56 LFLNSSSS------------SSSCLSHTLAISPRVLLNEDTEFDLHTEDEFEEEGDGEEE 103
L + S SS S ++ + + + E+ + EE
Sbjct: 68 LVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVVSERGIEDSEASEE 127
Query: 104 EEVIDEEIKSADSSSSTINGNSALEIPSLSVKEKKELASYAHSLGKKLKAQQVGKSGVTS 163
I ++ + +++ + SAL+ LS+KEKKELASYAHSLG KLK Q VGKSGVT
Sbjct: 128 VSEIGDKEEKTENTKKKKSRGSALK---LSIKEKKELASYAHSLGDKLKCQLVGKSGVTD 184
Query: 164 SLAAAFVENLESNELLKLKIHNSCPGEFADVVKQLEETTGSVAVGQIGRSVILYRPSLT 222
S+ +F+E LE NELLK+KI + P E D V+ LEE TGSVAVGQIGR+VILYRPS T
Sbjct: 185 SVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRTVILYRPSPT 243
>AT4G39040.1 | RNA-binding CRS1 / YhbY (CRM) domain protein |
Chr4:18189249-18190535 REVERSE LENGTH=296 | 201606
Length = 296
Score = 140 bits (352), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 133/239 (55%), Gaps = 23/239 (9%)
Query: 2 AASVHLLHHLLS-KTPTSSSSIFLKPFYITTAL----HLHKP-FRTIKTSPLSLPSSPLS 55
+S HL+H+LL P S +FL+PF + ++ H +KP F++ + PL P S
Sbjct: 10 CSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFSSKPL--PCHSAS 67
Query: 56 LFLNSSSS------------SSSCLSHTLAISPRVLLNEDTEFDLHTEDEFEEEGDGEEE 103
L + S SS S ++ + + + E+ + EE
Sbjct: 68 LVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVVSERGIEDSEASEE 127
Query: 104 EEVIDEEIKSADSSSSTINGNSALEIPSLSVKEKKELASYAHSLGKKLKAQQVGKSGVTS 163
I ++ + +++ + SAL+ LS+KEKKELASYAHSLG KLK Q VGKSGVT
Sbjct: 128 VSEIGDKEEKTENTKKKKSRGSALK---LSIKEKKELASYAHSLGDKLKCQLVGKSGVTD 184
Query: 164 SLAAAFVENLESNELLKLKIHNSCPGEFADVVKQLEETTGSVAVGQIGRSVILYRPSLT 222
S+ +F+E LE NELLK+KI + P E D V+ LEE TGSVAVGQIGR+VILYRPS T
Sbjct: 185 SVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRTVILYRPSPT 243
>AT4G29750.2 | CRS1 / YhbY (CRM) domain-containing protein |
Chr4:14569728-14572804 FORWARD LENGTH=818 | 201606
Length = 818
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 136 EKKELASYAHSLGKKLKAQQVGKSGVTSSLAAAFVENLESNELLKLKIHNSCPGEFADVV 195
E K L + A + +++K VG +G+T +L A E E +E++KLK
Sbjct: 248 ELKRLRNVALRMVERVK---VGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTH 304
Query: 196 KQLEETTGSVAVGQIGRSVILYRPSLTKLKAAE 228
+ LE+ TG + + + G SV+LYR KLK +
Sbjct: 305 EVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQ 337
>AT4G29750.1 | CRS1 / YhbY (CRM) domain-containing protein |
Chr4:14569728-14572962 FORWARD LENGTH=841 | 201606
Length = 841
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 136 EKKELASYAHSLGKKLKAQQVGKSGVTSSLAAAFVENLESNELLKLKIHNSCPGEFADVV 195
E K L + A + +++K VG +G+T +L A E E +E++KLK
Sbjct: 248 ELKRLRNVALRMVERVK---VGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTH 304
Query: 196 KQLEETTGSVAVGQIGRSVILYRPSLTKLKAAE 228
+ LE+ TG + + + G SV+LYR KLK +
Sbjct: 305 EVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQ 337