BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g1200.1
(318 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 108 1e-27
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 49 2e-06
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 108 bits (269), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 14/224 (6%)
Query: 12 TPGTPPNSSTMF--GIHHSDSPTTILITPLLSG-DNYASWSRGMKIALRAKDKLGFVDGS 68
+P + P+S IHH P+ I L DNY +W + LR K GF+DG+
Sbjct: 9 SPTSDPDSPYYLPPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGT 65
Query: 69 IQKPTTLIDLH-ARERCNDLVSSWLVNSVNPDIRQSILYDESVAEIWQNLYERFHQTNAP 127
+ KP L+ E+CN +V WL+NS+ + +S++Y E+ ++W++L F
Sbjct: 66 LPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDL 125
Query: 128 KIFQLKRAISTLKQEGSDVSTYFTLLKSHQDELQSLLAIEPCLCGH-----GKALIDRSN 182
KI+QL+R ++TL+Q G V YF L EL I C CG K +
Sbjct: 126 KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEARE 185
Query: 183 QDRAMEFLQG--LHDRFAAIRSQILLMDPFQSVLKIHSMVKQEE 224
+++ EFL G L+ F A+ ++I+ P S+ + +MVK E
Sbjct: 186 KEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 25/247 (10%)
Query: 18 NSSTMFGIHHSDSPTTILITPLLSGDNYASWSRGMKIALRAKDKLGFVDGSIQKPTTLID 77
N ++G+ + S +++ + NY +W + D +G +DG++ PT D
Sbjct: 6 NPEQIYGVSNIKSHIPVMLD--IEESNYDAWRELFLTHCLSFDVMGHIDGTLL-PTNAND 62
Query: 78 LHARERCNDLVSSWLVNSVNPDIRQ-SILYDESVAEIWQNLYERFHQTNAPKIFQLKRAI 136
++ ++R + +V L ++ P Q S + + +IW + +F + +L +
Sbjct: 63 VNWQKR-DGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSEL 121
Query: 137 STLKQEGSDVSTYFTLLKSHQDELQSLLAIEPCLCGHGKALIDRSNQDRAMEFLQGLHDR 196
T V+ Y+ +K D L+++ + ++++ M L GL+ +
Sbjct: 122 RTKDIGDMRVADYYRKMKKLADSLRNVD-------------VPVTDRNLVMYVLNGLNPK 168
Query: 197 FAAIRSQILLMDPFQSVLKIHSMVKQEE------IQQNLTNSDLASSEAATLAVGQQSSG 250
F I + I PF S +M+++EE I+ N T+ D +SS + LA +
Sbjct: 169 FDNIINVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSS-STVLACSEAPPV 227
Query: 251 VRFDRSG 257
F RSG
Sbjct: 228 TNFQRSG 234