BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0070.1
(242 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 73 6e-16
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 72.8 bits (177), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 59 VLQISKGSLTVMKGLKKNGLYPLQGNTVIGSVAVSLSDKEVETTKLLHMRLGHMSERGMA 118
VL++ KG T++KG + + LY LQG+ G +L++ + T+L H RL HMS+RGM
Sbjct: 28 VLKVLKGCRTILKGNRHDSLYILQGSVETGES--NLAETAKDETRLWHSRLAHMSQRGME 85
Query: 119 ILSKQGLLYRQKLGKLEFCEHFVFRKQCRVEFEIDTPVEVRP 160
+L K+G L K+ L+FCE ++ K RV F P
Sbjct: 86 LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNP 127