BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0210.1
(335 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19650.1 | cyclin-like protein | Chr3:6823543-6825174 FORWARD... 107 9e-27
>AT3G19650.1 | cyclin-like protein | Chr3:6823543-6825174 FORWARD
LENGTH=302 | 201606
Length = 302
Score = 107 bits (268), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 155/333 (46%), Gaps = 74/333 (22%)
Query: 22 PSSKRSRRDGKPATERTLSSNHDLDNVGRADQDQKHHRRLQDTLLPEASLEP-GAKSGTD 80
PS KRSRRDGKP ER LS DLD D ++ + L+D L L+ G++ ++
Sbjct: 23 PSPKRSRRDGKPEAERVLSKK-DLDVRDGTDTEKNSRQSLRDAPL---ELDAHGSRKDSE 78
Query: 81 ALNRELSKNTIGVDGTKPFSNPSDVLPHRSYFQHDERDSSAHGGRRAPYGHKMGSNTKNQ 140
K++ + TK + S V R Y QHD+R S RR ++++Q
Sbjct: 79 K------KHSGHHETTKAAPHLSQVPRSRPYSQHDDRRSDGKVDRRPTSVRGSWRSSRDQ 132
Query: 141 SIDKDESDRRARHSFPQRDDRISARGDNKTWRHDKFSELESDAPAPARKRPAFREKKIEP 200
S + D +++H + D +WRHD+F E + A +RKRPAFREKKI
Sbjct: 133 SNRRAGDDEKSQHRKDE---------DKSSWRHDRFRESDDTQGALSRKRPAFREKKIAE 183
Query: 201 ETENATAIT--------------ANETAW-----PNRHDRPIYGNSRRNERGDRYRDLDR 241
ET N T T NE W RH+RP G R R +R
Sbjct: 184 ETGNNTDRTRTEDGKDTNLNNRRQNERNWRSNTHSERHERPAMG---------RDRVWNR 234
Query: 242 PDRRLNGDRTLPHMIERESYRLRFPPIERFGTSNSGSRGRERFNGSHSEQNEYHRPSSFR 301
D R G R+SY+ +RF + GR F+GS + +NE
Sbjct: 235 DDERGAG--------SRQSYQA---DRDRFNGN-----GRSGFSGSWT-RNEK------- 270
Query: 302 SDKWKHDLYDEANKSPTQKNEEDQIAKVEALLA 334
KW HDL+DEANKSP + EE+QIAKVEALLA
Sbjct: 271 --KWDHDLFDEANKSPAKATEEEQIAKVEALLA 301