BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0220.1
(237 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 58 1e-09
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 49 5e-07
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 49 2e-06
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 46 8e-06
AT5G16486.1 | RNA-directed DNA polymerase (reverse transcriptase... 45 2e-05
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 63 NQDSRVWRQEEKEKMSVKQCYTLLETGDQI-MH-PTL--GKILGRKGIPPRVGFVLWATF 118
QDS +WR + ++ +T +QI +H PT+ K++ K PR + W +F
Sbjct: 92 GQDSFLWRNAAGSYL---PSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSF 148
Query: 119 IDRIPTVDALKRRGFMITNRCIMCEE-EETSSHMFLHCKVAQDIWTYF 165
++R+PT D L+ G I + ++C +ET +H+F C + IW +F
Sbjct: 149 LERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFF 196
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 99 KILGRKGIPPRVGFVLWATFIDRIPTVDALKRRGFMITNRCIMCE-EEETSSHMFLHCKV 157
K + KG P+ F+ W R+ T D + GF+ C+ C +ET H+F C+
Sbjct: 45 KAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEF 104
Query: 158 AQDIWTYF 165
A+++W YF
Sbjct: 105 AREVWIYF 112
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 7/145 (4%)
Query: 32 WEIKTRRGLNDWEINSYAELLESLQLVRLDSNQDSRVWRQE---EKEKMSVKQCYTLLET 88
W I + R N I LL Q + + DS +W+ + + S + ++ L
Sbjct: 64 WWIASSRSRNP-IIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHP 122
Query: 89 GDQIMHPTLGKILGRKGIPPRVGFVLWATFIDRIPTVDALKRRGFMITNRCIMCEEEETS 148
+ K + K P+ F+ W +R+ T D L+ G I C++C + S
Sbjct: 123 QSHTV--PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDS 180
Query: 149 -SHMFLHCKVAQDIWTYFLKSRDIN 172
+H+F C+ + +W +F S ++N
Sbjct: 181 RAHLFFECQFSGVVWRFFTASTNLN 205
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 54 SLQLVRLDSNQDSRVWRQEEK--EKMSVKQCYTLLETGDQIMHPTLGKILGRKGIPPRVG 111
S+ L L D W E+K S + + L ++ + K + KG P+
Sbjct: 5 SIDLPTLSGELDVYDWVVEDKLCNGFSSAKTWAALRPRSDVV--SWAKTVWFKGATPKHA 62
Query: 112 FVLWATFIDRIPTVDALKRRGFMITNRCIMCEEE-ETSSHMFLHCKVAQDIW 162
F +W T +DR+PT L G + C +C + E H+FL C+ A +W
Sbjct: 63 FHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLW 114
>AT5G16486.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:5383597-5384226 REVERSE LENGTH=209 | 201606
Length = 209
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 30 GVWEIKTRRGLNDW-EINSYAELLESLQLVRLDSNQDSRVWRQEEKEKM----SVKQCYT 84
GVW I R N ++ L S+ +++D+ D +W+ E S
Sbjct: 75 GVWWINGSRSRNPIIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIH 134
Query: 85 LLETGDQIMHPTLGKILGRKGIPPRVGFVLWATFIDRIPTVDALKRRGFMITNRCIMCEE 144
L G+++ K + KG P+ F+ W R+PT D L G + + C++C
Sbjct: 135 LNPVGEKV---DWHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNA 191
Query: 145 -EETSSHMFLHCKVAQDI 161
+ET H+F C A +I
Sbjct: 192 FDETRQHLFFDCVFAGEI 209