BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000072.1_g0250.1
         (290 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801...   103   1e-27
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C...    60   8e-10

>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
          Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
          Length = 97

 Score =  103 bits (256), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 2/94 (2%)

Query: 2  SNMIQPQIPRLTKENYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQKCVLK 61
          SN +  Q+P LTK NY++W ++M  +LG+ D+W+IV+ G++EP  E E  ++  QK  L+
Sbjct: 3  SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLR 60

Query: 62 DSRKMDKKALFLIYQGIDIPTFEKVSEAKSSKEA 95
          DSRK DKKAL LIYQG+D  TFEKV EA S+K+ 
Sbjct: 61 DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKDG 94


>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 16  NYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQKCVLKDSRKM---DKKALF 72
           +YE W       L  Q LWD+V NG  +   +       +Q   L   R     D KAL 
Sbjct: 16  DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75

Query: 73  LIYQGIDIPTFEKVSEAKSSKEAWNILK--NSFRGVDKVVKVRLQILRGEFERLSMNEGE 130
           ++   +    F K   A S+K+ W++L+  N    + ++ +V ++ L  + E L M + E
Sbjct: 76  ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135

Query: 131 LVSDYVSRVLSNVNEMKRCGEKCDDVPVMEKILRSLTPKFDNVVIIVEESKDLESMTVDE 190
             S Y+ + L  +  + R   +  D  + + +  +L+  FD +  ++EE  D+  MT   
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195

Query: 191 LM 192
           L+
Sbjct: 196 LV 197

Top