BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0310.1
(181 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 74 1e-16
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 72 1e-14
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 69 9e-14
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 65 2e-12
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 65 2e-12
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 73.6 bits (179), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 1 MQCFSIPKGIRNRIETLRRSFWWGKT---KTIHTINCSSICKPRKL-GGLGFRSPHIDNE 56
M CF + K + ++ + FWW + I + +CK ++ GGLGFR N+
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 57 TFLSKLAWRMINNPQELWARILKAKYFPKAQKPNPPKSNH-SWPWKSICKHYEQVGSLIV 115
L+K ++R+I+ P L +R+L+++YFP + S+ W+SI E + ++
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLL 127
Query: 116 WDINKGTKVNIWIDNWIPNHPPPIP 140
I G +W+D WI + P P
Sbjct: 128 RTIGDGIHTKVWLDRWIMDETPLPP 152
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 71.6 bits (174), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 1 MQCFSIPKGIRNRIETLRRSFWW---GKTKTIHTINCSSICKPRKLGGLGFRSPHIDNET 57
M CF +PK + +I ++ FWW + K +H + + GG+GF+ N
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLSKLAWRMINNPQELWARILKAKYFPKAQKPNPP-KSNHSWPWKSICKHYEQVGSLIVW 116
L K WRM++ P+ L A++ K++YF K+ N P S S+ WKSI E +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 117 DINKGTKVNIWIDNWIPNHP----------PPIPNIRNIELTWFSQLI--TNNEWNMNII 164
+ G + IW W+ + P PP + S LI + EW ++I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 165 NNYF 168
F
Sbjct: 188 EMLF 191
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 68.9 bits (167), Expect = 9e-14, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 1 MQCFSIPKGIRNRIETLRRSFWWG----KTKTIHTINCSSICKPRKLGGLGFRSPHIDNE 56
M F +P I+++ SF W TK + S +C P+ GGLG RS N+
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKA-KVAWSDVCTPKDEGGLGIRSLKEANK 194
Query: 57 TFLSKLAWRMINNPQELWARILKAKYFPKAQ--KPNPPKSNHSWPWKSICKHYEQVGSLI 114
L KL WRM+++ LW + L+ K + + SW WK I KH +
Sbjct: 195 VSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFV 253
Query: 115 VWDINKGTKVNIWIDNW 131
DI+ G+ + W DNW
Sbjct: 254 KHDIHNGSNTSFWFDNW 270
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 1 MQCFSIPKGIRNRIETLRRSFWWGK----TKTIHTINCSSICKPRKLGGLGFRSPHIDNE 56
M F +P I+++ SF W TK + S +C P+ GGLG RS N+
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKA-KVAWSDVCTPKDEGGLGIRSLKEANK 194
Query: 57 TFLSKLAWRMINNPQELWARILKAKYFPKAQ--KPNPPKSNHSWPWKSICKHYEQVGSLI 114
L KL WRM+++ LW + L+ K + + SW WK I KH +
Sbjct: 195 VSLLKLIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFV 253
Query: 115 VWDINKGTKVNIWIDNW 131
DI+ G+ + W DNW
Sbjct: 254 KHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 1 MQCFSIPKGIRNRIETLRRSFWWGK----TKTIHTINCSSICKPRKLGGLGFRSPHIDNE 56
M F +P I+++ SF W TK + S +C P+ GGLG RS N+
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKA-KVAWSDVCTPKDEGGLGIRSLKEANK 194
Query: 57 TFLSKLAWRMINNPQELWARILKAKYFPKAQ--KPNPPKSNHSWPWKSICKHYEQVGSLI 114
L KL WRM+++ LW + L+ K + + SW WK I KH +
Sbjct: 195 VSLLKLIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFV 253
Query: 115 VWDINKGTKVNIWIDNW 131
DI+ G+ + W DNW
Sbjct: 254 KHDIHNGSNTSFWFDNW 270