BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0620.1
(230 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 60 3e-10
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 59 1e-09
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 59 1e-09
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 58 1e-09
AT3G25720.1 | RNA-directed DNA polymerase (reverse transcriptase... 54 3e-08
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 2 RGGLGLRDVETMNLAMNIRHVWQLIGNKDTLWVRWVQKNLIRGKRFWTMKLPSTC-SWCW 60
GGLG+R ++ N ++ +W+++ + +LWV+W++ L+R FW++ +T SW W
Sbjct: 181 EGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMW 239
Query: 61 RRILGCRDVAREMVLYLIQDGSKT-FWKDVW 90
++IL R +A V + I +GS T FW D W
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 3 GGLGLRDVETMNLAMNIRHVWQLIGNKDTLWVRWVQKNLIRGKRFWTMKLPSTC-SWCWR 61
GGLG+R ++ N ++ +W+++ + +LWV+W++ L+R FW++ +T SW W+
Sbjct: 182 GGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWK 240
Query: 62 RILGCRDVAREMVLYLIQDGSKT-FWKDVW 90
+IL R +A V + I +GS T FW D W
Sbjct: 241 KILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 3 GGLGLRDVETMNLAMNIRHVWQLIGNKDTLWVRWVQKNLIRGKRFWTMKLPSTC-SWCWR 61
GGLG+R ++ N ++ +W+++ + +LWV+W++ L+R FW++ +T SW W+
Sbjct: 182 GGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWK 240
Query: 62 RILGCRDVAREMVLYLIQDGSKT-FWKDVW 90
+IL R +A V + I +GS T FW D W
Sbjct: 241 KILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 3 GGLGLRDVETMNLAMNIRHVWQLIGNKDTLWVRWVQKNLIRGKRFWTMKLPSTC-SWCWR 61
GGLG+R ++ N ++ +W+++ + +LWV+W++ L+R FW++ +T SW W+
Sbjct: 128 GGLGIRSLKEANKVSLLKLIWRML-SSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWK 186
Query: 62 RILGCRDVAREMVLYLIQDGSKT-FWKDVW 90
+IL R +A V + I +GS T FW D W
Sbjct: 187 KILKHRALASGFVKHDIHNGSNTSFWFDNW 216
>AT3G25720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9380234-9381405 FORWARD LENGTH=282 | 201606
Length = 282
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 3 GGLGLRDVETMNLAMNIRHVWQLIGNKDTLWVRWVQKNLIRG------KRFWTMKLPSTC 56
GGLGLR N +N++ VW+L +LWV W + + ++G +FWT + +
Sbjct: 25 GGLGLRWFSEWNTTLNLKLVWRLFSGGGSLWVDWHRYHHLQGLGDASVSKFWTSQELVSD 84
Query: 57 SWCWRRILGCRDVAREMVLYLIQDG-SKTFWKDVWLP 92
SW W+ +L R +A + I +G + FW D W P
Sbjct: 85 SWNWKCLLRLRPLAERFLRCNIGNGLTARFWTDNWTP 121