BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0040.1
(432 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 117 7e-31
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 104 2e-23
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 104 2e-23
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 2e-07
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 117 bits (292), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 12/130 (9%)
Query: 303 MVTRSKSGISKPKQIISLAASRHPVSKAFLASVDTLPEEPTSFTVASKDRNWQLAMADEF 362
M+TRSK+GI+K SL + T+ +EP S A KD W AM +E
Sbjct: 1 MLTRSKAGINKLNPKYSLTIT------------TTIKKEPKSVIFALKDPGWCQAMQEEL 48
Query: 363 NALLKNQTWILVPRDPKMNLVGCKWVYKVKSKSDGSIDRYKARLVAKGYSQQHGLDYDET 422
+AL +N+TWILVP N++GCKWV+K K SDG++DR KARLVAKG+ Q+ G+ + ET
Sbjct: 49 DALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVET 108
Query: 423 FSPVVKPVTI 432
+SPVV+ TI
Sbjct: 109 YSPVVRTATI 118
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 326 PVSKAFLASVDTLPEEPTSFTVASKDRNWQLAMADEFNALLKNQTWILVPRDPKMNLVGC 385
P+ +FL + +EP+++ A + W AM DE A+ TW + P +GC
Sbjct: 71 PLYHSFLVCIAK-AKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129
Query: 386 KWVYKVKSKSDGSIDRYKARLVAKGYSQQHGLDYDETFSPVVKPVTI 432
KWVYK+K SDG+I+RYKARLVAKGY+QQ G+D+ ETFSPV K ++
Sbjct: 130 KWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSV 176
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 326 PVSKAFLASVDTLPEEPTSFTVASKDRNWQLAMADEFNALLKNQTWILVPRDPKMNLVGC 385
P+ +FL + +EP+++ A + W AM DE A+ TW + P +GC
Sbjct: 71 PLYHSFLVCIAK-AKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129
Query: 386 KWVYKVKSKSDGSIDRYKARLVAKGYSQQHGLDYDETFSPVVKPVTI 432
KWVYK+K SDG+I+RYKARLVAKGY+QQ G+D+ ETFSPV K ++
Sbjct: 130 KWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSV 176
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 49.7 bits (117), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 55 RHVVETGLALLYQSHLPKHFWPEAFSTATYLINRLPTLTLKNESPYSVLYKRIPNYEFFR 114
R ++E ++L + LPK F +A +TA ++IN+ P+ + P V ++ +P Y + R
Sbjct: 3 RTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLR 62
Query: 115 VFGCRCF 121
FGC +
Sbjct: 63 RFGCVAY 69