BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0180.1
(608 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 93 1e-19
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 93 1e-19
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 92 7e-19
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 88 3e-18
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 82 4e-18
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 3/236 (1%)
Query: 351 YANCSGQKINYTKSSLHLSANCAIEKKEGILNVMGVKEMDSEDVYLGNFLLKPKYKISSY 410
+A+ SG +I+ KS++++ A K IL+ YLG LL K S Y
Sbjct: 38 FADFSGLQISLEKSTIYM-AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDY 96
Query: 411 DYIVQKVEKKLMGWKRNTLSHAGRTTLLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNF 470
+V+K+ ++ W LS AGR L+ S + S+ +++S +P I +I+ +F
Sbjct: 97 GPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSF 156
Query: 471 WWGHNSEVSKMHYINWDRLQENQKNRGLGIRNMGLVNQALIGKLVWRFVNEPNALWVRLL 530
W +K + W + + GLGIR++ N+ + KL+WR ++ +LWV+ L
Sbjct: 157 LWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWL 215
Query: 531 KAKYLKHLDFWQFKPKQSALSTATWQGILKMRERVKEGMCFLVGNGKNIRIWKDPW 586
+ L+ FW + L + W+ ILK R + + NG N W D W
Sbjct: 216 RLYLLRKGSFWSI-SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 3/236 (1%)
Query: 351 YANCSGQKINYTKSSLHLSANCAIEKKEGILNVMGVKEMDSEDVYLGNFLLKPKYKISSY 410
+A+ SG +I+ KS++++ A K IL+ YLG LL K S Y
Sbjct: 38 FADFSGLQISLEKSTIYM-AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDY 96
Query: 411 DYIVQKVEKKLMGWKRNTLSHAGRTTLLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNF 470
+V+K+ ++ W LS AGR L+ S + S+ +++S +P I +I+ +F
Sbjct: 97 GPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSF 156
Query: 471 WWGHNSEVSKMHYINWDRLQENQKNRGLGIRNMGLVNQALIGKLVWRFVNEPNALWVRLL 530
W +K + W + + GLGIR++ N+ + KL+WR ++ +LWV+ L
Sbjct: 157 LWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWL 215
Query: 531 KAKYLKHLDFWQFKPKQSALSTATWQGILKMRERVKEGMCFLVGNGKNIRIWKDPW 586
+ L+ FW + L + W+ ILK R + + NG N W D W
Sbjct: 216 RLYLLRKGSFWSI-SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 3/236 (1%)
Query: 351 YANCSGQKINYTKSSLHLSANCAIEKKEGILNVMGVKEMDSEDVYLGNFLLKPKYKISSY 410
+A+ SG +I+ KS++++ A K IL+ YLG LL K S Y
Sbjct: 38 FADFSGLQISLEKSTIYM-AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDY 96
Query: 411 DYIVQKVEKKLMGWKRNTLSHAGRTTLLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNF 470
+V+K+ ++ W LS AGR L+ S + S+ +++S +P I +I+ +F
Sbjct: 97 GPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSF 156
Query: 471 WWGHNSEVSKMHYINWDRLQENQKNRGLGIRNMGLVNQALIGKLVWRFVNEPNALWVRLL 530
W +K + W + + GLGIR++ N+ + KL+WR ++ +LWV+ L
Sbjct: 157 LWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWL 215
Query: 531 KAKYLKHLDFWQFKPKQSALSTATWQGILKMRERVKEGMCFLVGNGKNIRIWKDPW 586
+ L+ FW + L + W+ ILK R + + NG N W D W
Sbjct: 216 RLYLLRKGSFWSI-SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 16/218 (7%)
Query: 383 VMGVKEMDSEDV--------------YLGNFLLKPKYKISSYDYIVQKVEKKLMGWKRNT 428
+ GVK+ D D+ YLG LL K S Y +V+K+ ++ W
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 429 LSHAGRTTLLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNSEVSKMHYINWDR 488
LS AGR L+ S + S+ +++S +P I +I+ +F W +K + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 489 LQENQKNRGLGIRNMGLVNQALIGKLVWRFVNEPNALWVRLLKAKYLKHLDFWQFKPKQS 548
+ + GLGIR++ N+ + KL+WR ++ +LWV+ L+ L+ FW +
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSIS-GNT 178
Query: 549 ALSTATWQGILKMRERVKEGMCFLVGNGKNIRIWKDPW 586
L + W+ ILK R + + NG N W D W
Sbjct: 179 TLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 216
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 82.4 bits (202), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 444 SIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNSEVSKMHYINWDRLQENQKNRG-LGIRN 502
++P+Y +S + K + K+ FWW K+ ++ W +L +++++ G LG R+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 503 MGLVNQALIGKLVWRFVNEPNALWVRLLKAKYLKHLDFWQFKPKQSALSTATWQGILKMR 562
+G NQAL+ K +R +++P+ L RLL+++Y H + + W+ I+ R
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSM--MECSVGTRPSYAWRSIIHGR 119
Query: 563 ERVKEGMCFLVGNGKNIRIWKDPWV 587
E + G+ +G+G + ++W D W+
Sbjct: 120 ELLSRGLLRTIGDGIHTKVWLDRWI 144