BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0240.1
(720 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35240.4 | DNA-directed RNA polymerase subunit beta%2C putati... 410 e-132
AT4G35240.3 | DNA-directed RNA polymerase subunit beta%2C putati... 410 e-132
AT4G35240.2 | DNA-directed RNA polymerase subunit beta%2C putati... 410 e-131
AT4G35240.1 | DNA-directed RNA polymerase subunit beta%2C putati... 410 e-131
AT2G17110.1 | DNA-directed RNA polymerase subunit beta%2C putati... 400 e-129
>AT4G35240.4 | DNA-directed RNA polymerase subunit beta%2C putative
(DUF630 and DUF632) | Chr4:16761479-16764324 REVERSE
LENGTH=846 | 201606
Length = 846
Score = 410 bits (1055), Expect = e-132, Method: Compositional matrix adjust.
Identities = 263/552 (47%), Positives = 350/552 (63%), Gaps = 69/552 (12%)
Query: 164 YMNMNYMQNQPTQ-SVVYEQRPMSPETVHYGESSSSSYNPYSYPNYDNSGSYGYTPPVYS 222
YM+MNYM+N+ SVVYEQRP SP+ V+ GESSSS Y YP ++ +GY+ PV
Sbjct: 192 YMHMNYMKNKSMPPSVVYEQRPTSPQRVYIGESSSS----YPYPPQNSY--FGYSNPV-- 243
Query: 223 NYGGGSGGYYGYPPHVYSNYGGGGGGFFGSSSQYGSFSPPPQHYVAPSSSSKPPPPPPSP 282
G G G++GSSS + ++++KPPPPPPSP
Sbjct: 244 --------------------PGPGPGYYGSSSASTT-----------AAATKPPPPPPSP 272
Query: 283 PRASAWDFLNPFHMEKYYPPQTPSRDSKELREEEGIPELEDEDYRNEVVKEVHQDQKFVD 342
PR++ WDFLNPF + YYPP TPSRDS+ELREEEGIP+LED+D EVVKEV+ KF
Sbjct: 273 PRSNGWDFLNPF--DTYYPPYTPSRDSRELREEEGIPDLEDDDSHYEVVKEVYGKPKFAA 330
Query: 343 GSSGNLTQNVENEDQKGSDVKPI------------------HQPSNSVSAENPTVEYEVH 384
G + ++ S P+ +Q SVS E +EYEVH
Sbjct: 331 GGGHQPNPAAVHMMREESPSPPLDKSGASTSGGGDVGDASAYQSRPSVSVEKEGMEYEVH 390
Query: 385 LVDKNVVDNGEQSNEPGNVGSFRGRSAFTSVSEIVREIKAQFERASESGIEVSKMLEAGK 444
+V+K VV++ E+ + G +V E+ +EI+ QF +A+ESG E++K+LE GK
Sbjct: 391 VVEKKVVEDEERRSNATATRGGGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGK 450
Query: 445 LPYNRKNAVYQVSSKMLHSITPPLSVVTSSSAEKDSSG-----YSDIEDDVGRKLLSLSS 499
PY RK+A +SKMLH +TP L + ++ ++ Y+DIE+++ + +LSS
Sbjct: 451 HPYGRKHA----ASKMLHGVTPSLPSTSGGTSSSAAAAVVPPTYADIEEELASRSRNLSS 506
Query: 500 TLQKLYVWEKKLYSEVKVEERMRLIHDRKSRRLKRLVEKGAEAHKIDSTRTLVRALSTKI 559
TL KL++WEKKLY EVK EE++RL H++K R+LKRL ++GAEA K+D TR LVR +STKI
Sbjct: 507 TLHKLHLWEKKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTKI 566
Query: 560 RIAIQIVEKISMKINKLRDEELWPQINRLIHRLVKMWKTMLECHRSQCQAIAEAKNLDAF 619
RIAIQ+V+KIS+ INK+RDE+LWPQ+N LI L +MWKTMLECH+SQCQAI EA+ L
Sbjct: 567 RIAIQVVDKISVTINKIRDEDLWPQLNALIQGLTRMWKTMLECHQSQCQAIREAQGLGPI 626
Query: 620 ALNRNLNDTNLEATVQLELELLNWILRFSSWIIAQKAFVKALNNWLLKCLLDEREETEDG 679
++ L D +LEAT L EL+NWIL FSSW+ AQK +VK LN WL+KCLL E EET DG
Sbjct: 627 RASKKLGDEHLEATSLLGHELINWILGFSSWVSAQKGYVKELNKWLMKCLLYEPEETPDG 686
Query: 680 MAPFSPDGAISP 691
+ PFSP +P
Sbjct: 687 IVPFSPGRIGAP 698
>AT4G35240.3 | DNA-directed RNA polymerase subunit beta%2C putative
(DUF630 and DUF632) | Chr4:16761479-16764324 REVERSE
LENGTH=846 | 201606
Length = 846
Score = 410 bits (1055), Expect = e-132, Method: Compositional matrix adjust.
Identities = 263/552 (47%), Positives = 350/552 (63%), Gaps = 69/552 (12%)
Query: 164 YMNMNYMQNQPTQ-SVVYEQRPMSPETVHYGESSSSSYNPYSYPNYDNSGSYGYTPPVYS 222
YM+MNYM+N+ SVVYEQRP SP+ V+ GESSSS Y YP ++ +GY+ PV
Sbjct: 192 YMHMNYMKNKSMPPSVVYEQRPTSPQRVYIGESSSS----YPYPPQNSY--FGYSNPV-- 243
Query: 223 NYGGGSGGYYGYPPHVYSNYGGGGGGFFGSSSQYGSFSPPPQHYVAPSSSSKPPPPPPSP 282
G G G++GSSS + ++++KPPPPPPSP
Sbjct: 244 --------------------PGPGPGYYGSSSASTT-----------AAATKPPPPPPSP 272
Query: 283 PRASAWDFLNPFHMEKYYPPQTPSRDSKELREEEGIPELEDEDYRNEVVKEVHQDQKFVD 342
PR++ WDFLNPF + YYPP TPSRDS+ELREEEGIP+LED+D EVVKEV+ KF
Sbjct: 273 PRSNGWDFLNPF--DTYYPPYTPSRDSRELREEEGIPDLEDDDSHYEVVKEVYGKPKFAA 330
Query: 343 GSSGNLTQNVENEDQKGSDVKPI------------------HQPSNSVSAENPTVEYEVH 384
G + ++ S P+ +Q SVS E +EYEVH
Sbjct: 331 GGGHQPNPAAVHMMREESPSPPLDKSGASTSGGGDVGDASAYQSRPSVSVEKEGMEYEVH 390
Query: 385 LVDKNVVDNGEQSNEPGNVGSFRGRSAFTSVSEIVREIKAQFERASESGIEVSKMLEAGK 444
+V+K VV++ E+ + G +V E+ +EI+ QF +A+ESG E++K+LE GK
Sbjct: 391 VVEKKVVEDEERRSNATATRGGGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGK 450
Query: 445 LPYNRKNAVYQVSSKMLHSITPPLSVVTSSSAEKDSSG-----YSDIEDDVGRKLLSLSS 499
PY RK+A +SKMLH +TP L + ++ ++ Y+DIE+++ + +LSS
Sbjct: 451 HPYGRKHA----ASKMLHGVTPSLPSTSGGTSSSAAAAVVPPTYADIEEELASRSRNLSS 506
Query: 500 TLQKLYVWEKKLYSEVKVEERMRLIHDRKSRRLKRLVEKGAEAHKIDSTRTLVRALSTKI 559
TL KL++WEKKLY EVK EE++RL H++K R+LKRL ++GAEA K+D TR LVR +STKI
Sbjct: 507 TLHKLHLWEKKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTKI 566
Query: 560 RIAIQIVEKISMKINKLRDEELWPQINRLIHRLVKMWKTMLECHRSQCQAIAEAKNLDAF 619
RIAIQ+V+KIS+ INK+RDE+LWPQ+N LI L +MWKTMLECH+SQCQAI EA+ L
Sbjct: 567 RIAIQVVDKISVTINKIRDEDLWPQLNALIQGLTRMWKTMLECHQSQCQAIREAQGLGPI 626
Query: 620 ALNRNLNDTNLEATVQLELELLNWILRFSSWIIAQKAFVKALNNWLLKCLLDEREETEDG 679
++ L D +LEAT L EL+NWIL FSSW+ AQK +VK LN WL+KCLL E EET DG
Sbjct: 627 RASKKLGDEHLEATSLLGHELINWILGFSSWVSAQKGYVKELNKWLMKCLLYEPEETPDG 686
Query: 680 MAPFSPDGAISP 691
+ PFSP +P
Sbjct: 687 IVPFSPGRIGAP 698
>AT4G35240.2 | DNA-directed RNA polymerase subunit beta%2C putative
(DUF630 and DUF632) | Chr4:16761334-16764324 REVERSE
LENGTH=865 | 201606
Length = 865
Score = 410 bits (1053), Expect = e-131, Method: Compositional matrix adjust.
Identities = 263/552 (47%), Positives = 350/552 (63%), Gaps = 69/552 (12%)
Query: 164 YMNMNYMQNQPTQ-SVVYEQRPMSPETVHYGESSSSSYNPYSYPNYDNSGSYGYTPPVYS 222
YM+MNYM+N+ SVVYEQRP SP+ V+ GESSSS Y YP ++ +GY+ PV
Sbjct: 192 YMHMNYMKNKSMPPSVVYEQRPTSPQRVYIGESSSS----YPYPPQNSY--FGYSNPV-- 243
Query: 223 NYGGGSGGYYGYPPHVYSNYGGGGGGFFGSSSQYGSFSPPPQHYVAPSSSSKPPPPPPSP 282
G G G++GSSS + ++++KPPPPPPSP
Sbjct: 244 --------------------PGPGPGYYGSSSASTT-----------AAATKPPPPPPSP 272
Query: 283 PRASAWDFLNPFHMEKYYPPQTPSRDSKELREEEGIPELEDEDYRNEVVKEVHQDQKFVD 342
PR++ WDFLNPF + YYPP TPSRDS+ELREEEGIP+LED+D EVVKEV+ KF
Sbjct: 273 PRSNGWDFLNPF--DTYYPPYTPSRDSRELREEEGIPDLEDDDSHYEVVKEVYGKPKFAA 330
Query: 343 GSSGNLTQNVENEDQKGSDVKPI------------------HQPSNSVSAENPTVEYEVH 384
G + ++ S P+ +Q SVS E +EYEVH
Sbjct: 331 GGGHQPNPAAVHMMREESPSPPLDKSGASTSGGGDVGDASAYQSRPSVSVEKEGMEYEVH 390
Query: 385 LVDKNVVDNGEQSNEPGNVGSFRGRSAFTSVSEIVREIKAQFERASESGIEVSKMLEAGK 444
+V+K VV++ E+ + G +V E+ +EI+ QF +A+ESG E++K+LE GK
Sbjct: 391 VVEKKVVEDEERRSNATATRGGGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGK 450
Query: 445 LPYNRKNAVYQVSSKMLHSITPPLSVVTSSSAEKDSSG-----YSDIEDDVGRKLLSLSS 499
PY RK+A +SKMLH +TP L + ++ ++ Y+DIE+++ + +LSS
Sbjct: 451 HPYGRKHA----ASKMLHGVTPSLPSTSGGTSSSAAAAVVPPTYADIEEELASRSRNLSS 506
Query: 500 TLQKLYVWEKKLYSEVKVEERMRLIHDRKSRRLKRLVEKGAEAHKIDSTRTLVRALSTKI 559
TL KL++WEKKLY EVK EE++RL H++K R+LKRL ++GAEA K+D TR LVR +STKI
Sbjct: 507 TLHKLHLWEKKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTKI 566
Query: 560 RIAIQIVEKISMKINKLRDEELWPQINRLIHRLVKMWKTMLECHRSQCQAIAEAKNLDAF 619
RIAIQ+V+KIS+ INK+RDE+LWPQ+N LI L +MWKTMLECH+SQCQAI EA+ L
Sbjct: 567 RIAIQVVDKISVTINKIRDEDLWPQLNALIQGLTRMWKTMLECHQSQCQAIREAQGLGPI 626
Query: 620 ALNRNLNDTNLEATVQLELELLNWILRFSSWIIAQKAFVKALNNWLLKCLLDEREETEDG 679
++ L D +LEAT L EL+NWIL FSSW+ AQK +VK LN WL+KCLL E EET DG
Sbjct: 627 RASKKLGDEHLEATSLLGHELINWILGFSSWVSAQKGYVKELNKWLMKCLLYEPEETPDG 686
Query: 680 MAPFSPDGAISP 691
+ PFSP +P
Sbjct: 687 IVPFSPGRIGAP 698
>AT4G35240.1 | DNA-directed RNA polymerase subunit beta%2C putative
(DUF630 and DUF632) | Chr4:16761334-16764324 REVERSE
LENGTH=865 | 201606
Length = 865
Score = 410 bits (1053), Expect = e-131, Method: Compositional matrix adjust.
Identities = 263/552 (47%), Positives = 350/552 (63%), Gaps = 69/552 (12%)
Query: 164 YMNMNYMQNQPTQ-SVVYEQRPMSPETVHYGESSSSSYNPYSYPNYDNSGSYGYTPPVYS 222
YM+MNYM+N+ SVVYEQRP SP+ V+ GESSSS Y YP ++ +GY+ PV
Sbjct: 192 YMHMNYMKNKSMPPSVVYEQRPTSPQRVYIGESSSS----YPYPPQNSY--FGYSNPV-- 243
Query: 223 NYGGGSGGYYGYPPHVYSNYGGGGGGFFGSSSQYGSFSPPPQHYVAPSSSSKPPPPPPSP 282
G G G++GSSS + ++++KPPPPPPSP
Sbjct: 244 --------------------PGPGPGYYGSSSASTT-----------AAATKPPPPPPSP 272
Query: 283 PRASAWDFLNPFHMEKYYPPQTPSRDSKELREEEGIPELEDEDYRNEVVKEVHQDQKFVD 342
PR++ WDFLNPF + YYPP TPSRDS+ELREEEGIP+LED+D EVVKEV+ KF
Sbjct: 273 PRSNGWDFLNPF--DTYYPPYTPSRDSRELREEEGIPDLEDDDSHYEVVKEVYGKPKFAA 330
Query: 343 GSSGNLTQNVENEDQKGSDVKPI------------------HQPSNSVSAENPTVEYEVH 384
G + ++ S P+ +Q SVS E +EYEVH
Sbjct: 331 GGGHQPNPAAVHMMREESPSPPLDKSGASTSGGGDVGDASAYQSRPSVSVEKEGMEYEVH 390
Query: 385 LVDKNVVDNGEQSNEPGNVGSFRGRSAFTSVSEIVREIKAQFERASESGIEVSKMLEAGK 444
+V+K VV++ E+ + G +V E+ +EI+ QF +A+ESG E++K+LE GK
Sbjct: 391 VVEKKVVEDEERRSNATATRGGGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGK 450
Query: 445 LPYNRKNAVYQVSSKMLHSITPPLSVVTSSSAEKDSSG-----YSDIEDDVGRKLLSLSS 499
PY RK+A +SKMLH +TP L + ++ ++ Y+DIE+++ + +LSS
Sbjct: 451 HPYGRKHA----ASKMLHGVTPSLPSTSGGTSSSAAAAVVPPTYADIEEELASRSRNLSS 506
Query: 500 TLQKLYVWEKKLYSEVKVEERMRLIHDRKSRRLKRLVEKGAEAHKIDSTRTLVRALSTKI 559
TL KL++WEKKLY EVK EE++RL H++K R+LKRL ++GAEA K+D TR LVR +STKI
Sbjct: 507 TLHKLHLWEKKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTKI 566
Query: 560 RIAIQIVEKISMKINKLRDEELWPQINRLIHRLVKMWKTMLECHRSQCQAIAEAKNLDAF 619
RIAIQ+V+KIS+ INK+RDE+LWPQ+N LI L +MWKTMLECH+SQCQAI EA+ L
Sbjct: 567 RIAIQVVDKISVTINKIRDEDLWPQLNALIQGLTRMWKTMLECHQSQCQAIREAQGLGPI 626
Query: 620 ALNRNLNDTNLEATVQLELELLNWILRFSSWIIAQKAFVKALNNWLLKCLLDEREETEDG 679
++ L D +LEAT L EL+NWIL FSSW+ AQK +VK LN WL+KCLL E EET DG
Sbjct: 627 RASKKLGDEHLEATSLLGHELINWILGFSSWVSAQKGYVKELNKWLMKCLLYEPEETPDG 686
Query: 680 MAPFSPDGAISP 691
+ PFSP +P
Sbjct: 687 IVPFSPGRIGAP 698
>AT2G17110.1 | DNA-directed RNA polymerase subunit beta%2C putative
(DUF630 and DUF632) | Chr2:7443366-7445969 REVERSE
LENGTH=733 | 201606
Length = 733
Score = 400 bits (1029), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/577 (45%), Positives = 344/577 (59%), Gaps = 89/577 (15%)
Query: 150 HHHHETLESLPNNGYMNMNYMQNQPTQ-SVVYEQRPMSPETVHYGESSSSSYNPYSYPNY 208
HHH E +S P + Y++MNYM+N S+VYEQRP SP+ VH+GESSSSS + Y+
Sbjct: 105 HHHLEDDDSNPKS-YLHMNYMKNSYMPPSLVYEQRPSSPQRVHFGESSSSSTSEYN---- 159
Query: 209 DNSGSYGYTPPVYSNYGGGSGGYYGYPPHVYSNYGGGGGGFFGSSSQYGSFSPPPQHYVA 268
P++ SNYG
Sbjct: 160 ---------------------------PYLNSNYG------------------------- 167
Query: 269 PSSSSKPPPPPPSPPRASAWDFLNPFHMEKYYPPQTPSRDSKELREEEGIPELEDEDYRN 328
SK PPPPPSPPR WDFL+PF + YY P TPSRD++ELR+E G+P+LE++D
Sbjct: 168 ----SKLPPPPPSPPREKVWDFLDPF--DTYYTPYTPSRDTRELRDELGVPDLEEDDV-- 219
Query: 329 EVVKEVHQDQKFVDGSSGN----LTQNVENEDQKGSDVKPIHQPSNSVSAENPTVEYEVH 384
VVKEVH QKFV S + + G ++Q SVS E +E+EVH
Sbjct: 220 -VVKEVHGKQKFVAAVSVEEPLGNSGASTSGGGGGGGKASLYQTRPSVSVEKEEMEHEVH 278
Query: 385 LVDKNVVDN--GEQSNEPGNVGSFRGRSAFTSVSEIVREIKAQFERASESGIEVSKMLEA 442
+V+K +V++ G++ + + G V E+ +EI+AQF RA+ESG E++ MLE
Sbjct: 279 IVEKKIVEDSGGDEVRKSKAAVARGGGGVRRGVPEVAKEIEAQFLRAAESGNEIAVMLEV 338
Query: 443 GKLPYNRKNAVYQVSSKMLHSITPPLSVVTSS--------SAEKDSS----GYSDIEDDV 490
GK PY RKN VSSK L+ TP SVV+S+ AE SS Y+DIE ++
Sbjct: 339 GKHPYGRKN----VSSKKLYEGTPSPSVVSSAQSSTSKKAKAEASSSVTAPTYADIEAEL 394
Query: 491 GRKLLSLSSTLQKLYVWEKKLYSEVKVEERMRLIHDRKSRRLKRLVEKGAEAHKIDSTRT 550
K +LSSTL KL++WEKKLY EVK EE+MR+ H++K R+LKR+ E+GAE K+DSTR
Sbjct: 395 ALKSRNLSSTLHKLHLWEKKLYDEVKAEEKMRVNHEKKLRKLKRMDERGAENQKVDSTRK 454
Query: 551 LVRALSTKIRIAIQIVEKISMKINKLRDEELWPQINRLIHRLVKMWKTMLECHRSQCQAI 610
LVR+LSTKIRIAIQ+V+KIS+ INK+RDEELW Q+N LI L KMWK+MLECH+SQC+AI
Sbjct: 455 LVRSLSTKIRIAIQVVDKISVTINKIRDEELWLQLNELIQGLSKMWKSMLECHKSQCEAI 514
Query: 611 AEAKNLDAFALNRNLNDTNLEATVQLELELLNWILRFSSWIIAQKAFVKALNNWLLKCLL 670
EA+ L ++N +LE T L EL+NWI+ FSSW+ AQK FV+ LN+WL+KCL
Sbjct: 515 KEARGLGPIRASKNFGGEHLEVTRTLGYELINWIVGFSSWVSAQKGFVRELNSWLMKCLF 574
Query: 671 DEREETEDGMAPFSPDGAISPTNGSGSNQSPSSCNNL 707
E EET DG+ PFSP +P NQ + + +
Sbjct: 575 YEPEETPDGIVPFSPGRIGAPMIFVICNQWEQALDRI 611