BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0590.1
(429 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11650.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 194 1e-58
AT1G11650.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 194 2e-57
AT5G54900.1 | RNA-binding protein 45A | Chr5:22295412-22298126 F... 182 6e-53
AT5G19350.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 182 8e-53
AT5G19350.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 182 9e-53
>AT1G11650.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:3914895-3917301 FORWARD LENGTH=306 | 201606
Length = 306
Score = 194 bits (494), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 135/206 (65%), Gaps = 12/206 (5%)
Query: 157 PPPSSYTPPSYSPPYSPYSPSSYSPSLPSSYAPPPREQQPPQQAQPYMMTQQQHSYQASQ 216
PPP P PP + P + APPP + PQ A P + Q
Sbjct: 5 PPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPPPPQMWNPQAAAP----------PSVQ 54
Query: 217 PTSADEIRTLWIGNLQSWMEESYIHGYFAHTRKVVNVKVIRNKKTGQSDCYGFVEFVSHA 276
PT+ADEIRTLWIG+LQ WM+E++++G FAHT ++V+ KVIRNK+TGQ + YGF+EF SHA
Sbjct: 55 PTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHA 114
Query: 277 AAERILQSHGGSLMPNV-EHNFRMNWASFGSGERRQDSSADFTIFVEDLASDVTHYTLQK 335
AAER+LQ+ + +P+ + FR+NWAS SG++R DS D+TIFV DLA+DVT Y L +
Sbjct: 115 AAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP-DYTIFVGDLAADVTDYILLE 173
Query: 336 TFKSHYTSVKGATVVTDRTTRQSKEY 361
TF++ Y SVKGA VV DR T ++K Y
Sbjct: 174 TFRASYPSVKGAKVVIDRVTGRTKGY 199
>AT1G11650.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:3914895-3917941 FORWARD LENGTH=405 | 201606
Length = 405
Score = 194 bits (493), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 135/206 (65%), Gaps = 12/206 (5%)
Query: 157 PPPSSYTPPSYSPPYSPYSPSSYSPSLPSSYAPPPREQQPPQQAQPYMMTQQQHSYQASQ 216
PPP P PP + P + APPP + PQ A P + Q
Sbjct: 5 PPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPPPPQMWNPQAAAP----------PSVQ 54
Query: 217 PTSADEIRTLWIGNLQSWMEESYIHGYFAHTRKVVNVKVIRNKKTGQSDCYGFVEFVSHA 276
PT+ADEIRTLWIG+LQ WM+E++++G FAHT ++V+ KVIRNK+TGQ + YGF+EF SHA
Sbjct: 55 PTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHA 114
Query: 277 AAERILQSHGGSLMPNV-EHNFRMNWASFGSGERRQDSSADFTIFVEDLASDVTHYTLQK 335
AAER+LQ+ + +P+ + FR+NWAS SG++R DS D+TIFV DLA+DVT Y L +
Sbjct: 115 AAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP-DYTIFVGDLAADVTDYILLE 173
Query: 336 TFKSHYTSVKGATVVTDRTTRQSKEY 361
TF++ Y SVKGA VV DR T ++K Y
Sbjct: 174 TFRASYPSVKGAKVVIDRVTGRTKGY 199
>AT5G54900.1 | RNA-binding protein 45A | Chr5:22295412-22298126
FORWARD LENGTH=387 | 201606
Length = 387
Score = 182 bits (461), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 205 MTQQQHSYQASQPTSADEIRTLWIGNLQSWMEESYIHGYFAHTRKVVNVKVIRNKKTGQS 264
+ Q Q+ + P SA ++++LWIG+LQ WM+E+YI FA + + + KVIRNK TGQS
Sbjct: 41 LGQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQS 100
Query: 265 DCYGFVEFVSHAAAERILQSHGGSLMPNVEHNFRMNWASFGSGERR-QDSSADFTIFVED 323
+ YGF+EFVSH+ AER+LQ++ G+ MP+ E FR+NWA G+GE+R Q D TIFV D
Sbjct: 101 EGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGD 160
Query: 324 LASDVTHYTLQKTFKSHYTSVKGATVVTDRTTRQSKEYDNSDYKFNEANRQ 374
LA +VT Y L TFK+ Y SVKGA VV DRTT +SK Y +F + N Q
Sbjct: 161 LAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGY--GFVRFADENEQ 209
>AT5G19350.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr5:6518978-6521295 FORWARD LENGTH=421 | 201606
Length = 421
Score = 182 bits (462), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 3/154 (1%)
Query: 217 PTSADEIRTLWIGNLQSWMEESYIHGYFAHTRKVVNVKVIRNKKTGQSDCYGFVEFVSHA 276
P + +E+RTLWIG+LQ W++E+Y+ F+ T ++V+VKVIRNK TGQ + YGF+EF+SHA
Sbjct: 17 PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76
Query: 277 AAERILQSHGGSLMPNVEHNFRMNWASFGSGERRQDSSADFTIFVEDLASDVTHYTLQKT 336
AAER LQ++ G+ MP E FR+NWASFGSG++ D+ D +IFV DLA DVT Y LQ+T
Sbjct: 77 AAERTLQTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQET 135
Query: 337 FKSHYTSVKGATVVTDRTTRQSKEYDNSDYKFNE 370
F+ HY+SV+GA VVTD +T +SK Y KF E
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGY--GFVKFAE 167
>AT5G19350.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr5:6518978-6521295 FORWARD LENGTH=425 | 201606
Length = 425
Score = 182 bits (462), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 3/154 (1%)
Query: 217 PTSADEIRTLWIGNLQSWMEESYIHGYFAHTRKVVNVKVIRNKKTGQSDCYGFVEFVSHA 276
P + +E+RTLWIG+LQ W++E+Y+ F+ T ++V+VKVIRNK TGQ + YGF+EF+SHA
Sbjct: 17 PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76
Query: 277 AAERILQSHGGSLMPNVEHNFRMNWASFGSGERRQDSSADFTIFVEDLASDVTHYTLQKT 336
AAER LQ++ G+ MP E FR+NWASFGSG++ D+ D +IFV DLA DVT Y LQ+T
Sbjct: 77 AAERTLQTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQET 135
Query: 337 FKSHYTSVKGATVVTDRTTRQSKEYDNSDYKFNE 370
F+ HY+SV+GA VVTD +T +SK Y KF E
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGY--GFVKFAE 167