BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0610.1
(273 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 61 6e-11
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 61 8e-11
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 62 1e-10
AT1G04625.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 60 2e-10
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 60 4e-10
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 61.2 bits (147), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 85 INIPLLVRNIRTYNQSQTSM---LRAFPFLQQPNTNQWTSPPQGVIKINYDVSFIKNTLT 141
I + L + Y ++ T R+ ++ N ++W P +G IK N+D SF+ +
Sbjct: 15 ITLRLAQTDAHEYTEANTVAQINTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNGDVK 74
Query: 142 LALAFVVHDSTGTQ-IAGESFLTKARSVDEGEGKAALLGVHWVVNNGVKKLILEGDSINI 200
+VV DS G+ +AG++ K + E E +A ++ + ++G K++ EGD+ +
Sbjct: 75 SKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDNKML 134
Query: 201 NNFLNGVSSNMHWTAKHVLRQVKKARCNFDYISFAYVNRKLNSKANSL 248
+ +NG S +++ + +R + F+ I F ++ R N+ A+ L
Sbjct: 135 FDLING--SKVYFGVHNWIRDIHWWLRKFESIHFNWIRRHHNTPADIL 180
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 60.8 bits (146), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 68 IWLVWKCRCDVVFRNTNINIPLLVR----------NIRTYNQSQTS-MLRAFPFLQQPNT 116
+W +W+ R +VF++ N++ ++ N + Y QS +R ++
Sbjct: 1 MWRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTH 60
Query: 117 NQWTSPPQGVIKINYDVSFIKNTLTLALAFVVHDSTG-TQIAGESFLTKARSVDEGEGKA 175
+W PP G IK NYD SF T +++ D G + A ++ + E E +A
Sbjct: 61 QKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQA 120
Query: 176 ALLGVHWVVNNGVKKLILEGDSININNFLNGVSSNMHWTAKHVLRQVKKARCNFDYISFA 235
++ + + G +K+I EGDS + LN MH+ A + +R+ F+ + F+
Sbjct: 121 LVMAMQHTWSQGYRKVIFEGDSKQVEELLN--RKQMHFGAFNWIREAWSWSKRFEEVIFS 178
Query: 236 YVNRKLNSKANSL 248
+ R N A+ L
Sbjct: 179 WTPRTNNQPADML 191
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 11/203 (5%)
Query: 55 EATLSQLETLATA--IWLVWKCRCDVVFRN--TNINIPLLVRNIRTY---NQSQTSMLRA 107
+ T+S L IW +WK R +VVF + + +L T+ N +Q+
Sbjct: 254 DTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTP 313
Query: 108 FPFLQ-QPNTNQWTSPPQGVIKINYDVSFIKNTLTLALAFVVHDSTGTQIA-GESFLTKA 165
P Q N +W +PP +K N+D F L +++ + GT I+ G L
Sbjct: 314 SPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHT 373
Query: 166 RSVDEGEGKAALLGVHWVVNNGVKKLILEGDSININNFLNGVSSNMHWTAKHVLRQVKKA 225
+ E E KA L + G ++ +EGD + N +NG+S H + + L +
Sbjct: 374 SNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGIS--FHSSLANHLEDISFW 431
Query: 226 RCNFDYISFAYVNRKLNSKANSL 248
F I F ++ RK N A+ L
Sbjct: 432 ANKFASIQFGFIRRKGNKLAHVL 454
>AT1G04625.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:1287831-1289820 REVERSE
LENGTH=257 | 201606
Length = 257
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 112 QQPNTNQWTSPPQGVIKINYDVSFIKNTLTLALAFVVHDSTGTQIAGESFLTKARSVD-- 169
Q+P N WT+PP G K NYD ++ N + A +++ D GT FL A ++
Sbjct: 75 QEPTANLWTTPPIGWTKCNYDGTYHSNAPSKA-GWLLRDDRGT------FLGAAHAIGSI 127
Query: 170 -----EGEGKAALLGVHWVVNNGVKKLILEGDSININNFLNGVSSN---MHWTAKHVLRQ 221
E E +A ++ + + G +K+ EGD+ ++ +NG SSN +W +R
Sbjct: 128 TTNPMESELQALVMAMQHCWSRGYRKIYFEGDNKEVSEIVNGRSSNFAVFNW-----IRD 182
Query: 222 VKKARCNFDYISFAYVNRKLNSKANSLYWNNIFIILYWRIYQY 264
+ R F+ F + R N A++L + + + Y Y
Sbjct: 183 ISAWRSKFEECKFTWTRRFSNMAADALAKQQLPLNTQFYCYNY 225
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 19/207 (9%)
Query: 68 IWLVWKCRCDVVFRNTNINIPLLVR-----------NIRTYNQSQTSMLRAFPFLQQPNT 116
+W +WK D+VF +T V N T N+ Q A P
Sbjct: 48 MWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMT-NEQQNGNRNADP----SRN 102
Query: 117 NQWTSPPQGVIKINYDVSFIKNTLTLALAFVVHDSTGTQI-AGESFLTKARSVDEGEGKA 175
+W+ P + +K NYD S + L +++ +S GT I G + +E E
Sbjct: 103 TKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECST 162
Query: 176 ALLGVHWVVNNGVKKLILEGDSININNFLNGVSSNMHWTAKHVLRQVKKARCNFDYISFA 235
+ + G KK+I EGD+ I +N SSN +H L ++ +F+ I F+
Sbjct: 163 LIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPR--LQHFLDTIQSWIPSFESIEFS 220
Query: 236 YVNRKLNSKANSLYWNNIFIILYWRIY 262
+ +R+ N A+ L I W ++
Sbjct: 221 FKHREQNGCADFLAKQAIKENTQWSLF 247