BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0650.1
(629 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 166 6e-44
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 132 1e-32
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 132 1e-32
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 129 7e-31
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 106 3e-24
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 166 bits (420), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 233/499 (46%), Gaps = 51/499 (10%)
Query: 152 TVPRYQMQCFALPKSVSKRITTVQKSFWW---GKSKGICTKAWTSICRPKKEGGLGIHLL 208
+P Y M CF LPK+V K+I +V FWW ++KG+ KAW + K EGG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 209 DLDNNAFLSKLAWRLRTEPKAAWVQLLKAKYFPHTDTPGHSK--NHHSWIWKNINKVYNQ 266
+ N A L K WR+ + P++ ++ K++YF H P ++ + S++WK+I+
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 267 VQDLTCWEIHSGTEVNIWNDNWIPD--------LQ--PPLHNDNNSSLVKVSQLI--SND 314
++ + +G ++ IW W+ +Q PP + SS++KVS LI S
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 315 KWNENILAETFDMATSNLI-KTTPIDSSGNHHIRWKLSTSGKFTIKSMYNHLRNSIS--- 370
+W ++++ F LI + P W ++SG +T+KS Y L I+
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 371 -----TTPSTPYNWNFIWSIPTIPHIQLFIWKICTKALPVKNRIG-KYIGNDFLCTKCPT 424
+ PS + IW T P IQ F+WK + +LPV + +++ + C +CP+
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 425 -QETMEHALLHCPMAKNIWFYFNVI-------SENISSTIDWIFSWKNS-PQRTTTINGS 475
+ET+ H L C A+ W ++ +++I + W+F+ N PQ
Sbjct: 301 CKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKA--SQ 358
Query: 476 HFATILWFIWKMRCDNCF-------QQIISETNSVITN--IKSFPEKLVEKNRNNSPKSA 526
+LW +WK R + F Q+++ + I++ E K + N
Sbjct: 359 LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 527 RWKPPAAPYIKINVDASFISVTEHIGIGLIAHND--ESRFLGAFASSEKARNSEEGEAVA 584
RW+PP ++K N DA++ E GIG + N+ E +++GA A K ++ E E A
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALP-KLKSVLEAELEA 477
Query: 585 ILHGLLWANHNNHKNIIIE 603
+ +L + + +I E
Sbjct: 478 MRWAVLSLSRFQYNYVIFE 496
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 177/449 (39%), Gaps = 55/449 (12%)
Query: 27 MEISHLLFADDCIIFGTNSLDNIYNLKNLLRTFCDASGQIINYSKSNIFFSKNSHPKFKR 86
M I+HL FADD ++F +I + + F D SG I+ KS I+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 87 MITKSLKVKYASTSEKYLGAQLFIGANKTKIFNELIEQINKKLNKWNHYFLSQAGRTVVI 146
I S + +YLG L T + L+E+I ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 147 SSVAATVPRYQMQCFALPKSVSKRITTVQKSFWWGKSKGICTK---AWTSICRPKKEGGL 203
SSV ++ + M F LP + K I ++ SF W + K AW+ +C PK EGGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 204 GIHLLDLDNNAFLSKLAWRLRTEPKAAWVQLLKAKYFPHTDTPGHSKNH--HSWIWKNIN 261
GI L N L KL WR+ + + WVQ L+ S N SW+WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 262 KVYNQVQDLTCWEIHSGTEVNIWNDNW--------------IPDLQPPLHNDNNSSLVKV 307
K +IH+G+ + W DNW D+ LH V
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH-------ASV 296
Query: 308 SQLISNDKWN----------ENILAETFDMATSNLIKTTPIDSSGNHHIRWKLSTSGKFT 357
++ + N + E+++AE +SG +RWK +
Sbjct: 297 AEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGL----------TSGEDTVRWKGNGD---I 343
Query: 358 IKSMYNHLRNSIST-TPSTPYNW-NFIWSIPTIPHIQLFIWKICTKALPVKNRIGKY-IG 414
K +N +T P NW +W P + W L +R+ + G
Sbjct: 344 FKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAG 403
Query: 415 NDFLCTKC-PTQETMEHALLHCPMAKNIW 442
D C C ET +H CP + +W
Sbjct: 404 ADSSCVLCHHLVETRDHLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 177/449 (39%), Gaps = 55/449 (12%)
Query: 27 MEISHLLFADDCIIFGTNSLDNIYNLKNLLRTFCDASGQIINYSKSNIFFSKNSHPKFKR 86
M I+HL FADD ++F +I + + F D SG I+ KS I+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 87 MITKSLKVKYASTSEKYLGAQLFIGANKTKIFNELIEQINKKLNKWNHYFLSQAGRTVVI 146
I S + +YLG L T + L+E+I ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 147 SSVAATVPRYQMQCFALPKSVSKRITTVQKSFWWGKSKGICTK---AWTSICRPKKEGGL 203
SSV ++ + M F LP + K I ++ SF W + K AW+ +C PK EGGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 204 GIHLLDLDNNAFLSKLAWRLRTEPKAAWVQLLKAKYFPHTDTPGHSKNH--HSWIWKNIN 261
GI L N L KL WR+ + + WVQ L+ S N SW+WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 262 KVYNQVQDLTCWEIHSGTEVNIWNDNW--------------IPDLQPPLHNDNNSSLVKV 307
K +IH+G+ + W DNW D+ LH V
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH-------ASV 296
Query: 308 SQLISNDKWN----------ENILAETFDMATSNLIKTTPIDSSGNHHIRWKLSTSGKFT 357
++ + N + E+++AE +SG +RWK +
Sbjct: 297 AEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGL----------TSGEDTVRWKGNGD---I 343
Query: 358 IKSMYNHLRNSIST-TPSTPYNW-NFIWSIPTIPHIQLFIWKICTKALPVKNRIGKY-IG 414
K +N +T P NW +W P + W L +R+ + G
Sbjct: 344 FKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAG 403
Query: 415 NDFLCTKC-PTQETMEHALLHCPMAKNIW 442
D C C ET +H CP + +W
Sbjct: 404 ADSSCVLCHHLVETRDHLFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 177/450 (39%), Gaps = 55/450 (12%)
Query: 27 MEISHLLFADDCIIFGTNSLDNIYNLKNLLRTFCDASGQIINYSKSNIFFSKNSHPKFKR 86
M I+HL FADD ++F +I + + F D SG I+ KS I+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 87 MITKSLKVKYASTSEKYLGAQLFIGANKTKIFNELIEQINKKLNKWNHYFLSQAGRTVVI 146
I S + +YLG L T + L+E+I ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 147 SSVAATVPRYQMQCFALPKSVSKRITTVQKSFWWGKSKGICTK---AWTSICRPKKEGGL 203
SSV ++ + M F LP + K I ++ SF W + K AW+ +C PK EGGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 204 GIHLLDLDNNAFLSKLAWRLRTEPKAAWVQLLKAKYFPHTDTPGHSKNH--HSWIWKNIN 261
GI L N L KL WR+ + + WVQ L+ S N SW+WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 262 KVYNQVQDLTCWEIHSGTEVNIWNDNWIP--------------DLQPPLHNDNNSSLVKV 307
K +IH+G+ + W DNW D+ LH V
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH-------ASV 296
Query: 308 SQLISNDKWN----------ENILAETFDMATSNLIKTTPIDSSGNHHIRWKLSTSGKFT 357
++ + N + E+++AE +SG +RWK +
Sbjct: 297 AEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGL----------TSGEDTVRWKGNGD---I 343
Query: 358 IKSMYNHLRN-SISTTPSTPYNW-NFIWSIPTIPHIQLFIWKICTKALPVKNRIGKY-IG 414
K +N + + P NW +W P + W L +R+ + G
Sbjct: 344 FKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAG 403
Query: 415 NDFLCTKC-PTQETMEHALLHCPMAKNIWF 443
D C C ET +H CP + + F
Sbjct: 404 ADSSCVLCHHLVETRDHLFFTCPYSAEVPF 433
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 146/374 (39%), Gaps = 54/374 (14%)
Query: 102 KYLGAQLFIGANKTKIFNELIEQINKKLNKWNHYFLSQAGRTVVISSVAATVPRYQMQCF 161
+YLG L T + L+E+I ++ KW LS AGR +ISSV ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 162 ALPKSVSKRITTVQKSFWWGKSKGICTK---AWTSICRPKKEGGLGIHLLDLDNNAFLSK 218
LP + K I ++ SF W + K AW+ +C PK EGGLGI L N L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 219 LAWRLRTEPKAAWVQLLKAKYFPHTDTPGHSKNH--HSWIWKNINKVYNQVQDLTCWEIH 276
L WR+ + + WVQ L+ S N SW+WK I K +IH
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 277 SGTEVNIWNDNW--------------IPDLQPPLHNDNNSSLVKVSQLISNDKWN----- 317
+G+ + W DNW D+ LH V++ + N +
Sbjct: 205 NGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH-------ASVAEAVVNHRPRRHRHD 257
Query: 318 -----ENILAETFDMATSNLIKTTPIDSSGNHHIRWKLSTSGKFTIKSMYNHLRNSIST- 371
E+++AE +SG +RWK + K +N +T
Sbjct: 258 TLLRIEDVIAEVRHQGL----------TSGEDTVRWKGNGD---IFKPCFNTKETWAATR 304
Query: 372 TPSTPYNW-NFIWSIPTIPHIQLFIWKICTKALPVKNRIGKY-IGNDFLCTKC-PTQETM 428
P NW +W P + W L +R+ + G D C C ET
Sbjct: 305 EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETR 364
Query: 429 EHALLHCPMAKNIW 442
+H CP + +W
Sbjct: 365 DHLFFTCPYSAEVW 378