BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0880.1
(99 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55620.1 | Translation initiation factor IF6 | Chr3:20634581-... 47 3e-07
>AT3G55620.1 | Translation initiation factor IF6 |
Chr3:20634581-20636312 FORWARD LENGTH=245 | 201606
Length = 245
Score = 47.0 bits (110), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 21 VHSHTSNEDLGKLSNL-----EVGTVNKGSEVMGAGMTVNTEQHFAG 62
VH HTS EDL +LS L GTVN+GSEV+ AGMTVN F G
Sbjct: 161 VHPHTSVEDLEELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTSFCG 207