BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000076.1_g0900.1
         (652 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase...   105   1e-23
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase...   105   1e-23
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase...   106   2e-23
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1...   103   1e-22
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase...    87   8e-18

>AT3G24255.5 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
          Length = 532

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 3/245 (1%)

Query: 397 YAPSVSHLMFADDLFFFRKASDFNVAQLKVILDAYEKCSGQLINFQKSSIQFSTNCDSTR 456
           Y   ++HL FADDL  F      ++  +  I   +   SG  I+ +KS+I  +   D+ +
Sbjct: 4   YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63

Query: 457 RNKILSILGVKEMKKDDVYLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSSLSHAGRTV 516
            + IL             YLG  LL  K   + Y  +V KI  ++  W    LS AGR  
Sbjct: 64  AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122

Query: 517 LLKSELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKRMQASKKEG 576
           L+ S + S+  +++S   +P   I++I+    +F W      +K   ++W  +   K EG
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182

Query: 577 GLGIRDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT-STCTWRS 635
           GLGIR +   N+  + KL WR +    SLWVQ L+   L+ G+FW+     T  +  W+ 
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241

Query: 636 ILDMR 640
           IL  R
Sbjct: 242 ILKHR 246


>AT3G24255.4 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
          Length = 532

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 3/245 (1%)

Query: 397 YAPSVSHLMFADDLFFFRKASDFNVAQLKVILDAYEKCSGQLINFQKSSIQFSTNCDSTR 456
           Y   ++HL FADDL  F      ++  +  I   +   SG  I+ +KS+I  +   D+ +
Sbjct: 4   YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63

Query: 457 RNKILSILGVKEMKKDDVYLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSSLSHAGRTV 516
            + IL             YLG  LL  K   + Y  +V KI  ++  W    LS AGR  
Sbjct: 64  AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122

Query: 517 LLKSELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKRMQASKKEG 576
           L+ S + S+  +++S   +P   I++I+    +F W      +K   ++W  +   K EG
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182

Query: 577 GLGIRDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT-STCTWRS 635
           GLGIR +   N+  + KL WR +    SLWVQ L+   L+ G+FW+     T  +  W+ 
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241

Query: 636 ILDMR 640
           IL  R
Sbjct: 242 ILKHR 246


>AT3G24255.7 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
          Length = 828

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 401 VSHLMFADDLFFFRKASDFNVAQLKVILDAYEKCSGQLINFQKSSIQFSTNCDSTRRNKI 460
           ++HL FADDL  F      ++  +  I   +   SG  I+ +KS+I  +   D+ + + I
Sbjct: 8   ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD-I 66

Query: 461 LSILGVKEMKKDDVYLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSSLSHAGRTVLLKS 520
           L             YLG  LL  K   + Y  +V KI  ++  W    LS AGR  L+ S
Sbjct: 67  LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126

Query: 521 ELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKRMQASKKEGGLGI 580
            + S+  +++S   +P   I++I+    +F W      +K   ++W  +   K EGGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186

Query: 581 RDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT-STCTWRSILDM 639
           R +   N+  + KL WR +    SLWVQ L+   L+ G+FW+     T  +  W+ IL  
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245

Query: 640 R 640
           R
Sbjct: 246 R 246


>AT1G43760.1 | DNAse I-like superfamily protein |
           Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
          Length = 626

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 4/188 (2%)

Query: 61  FWRQRAKRHWVEENDRNTRFFHLSVLNRRRKNNIHAVKLDDQSWSSDPEKITNVFLNHFY 120
           F+RQ+++  W+++ D NTRFFH  +L  + KN I  +++DD     +  ++  + + ++ 
Sbjct: 434 FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYT 493

Query: 121 RASRAEQVTEFPSALE-LTD-RPLLAIENMM--LSTPPLKEEIWQVIRKMKSYKAPGKDG 176
               ++     P +++ + D  P    + +   LS  P  +EI   +  M   KAPG D 
Sbjct: 494 HLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDS 553

Query: 177 YSAIFYKRCWDTIGDEVTSEIKTIFETGQLPGNLNHTFITLIPKIQAPETPVDFRPISLC 236
           ++A F+   W  + D   + +K  F TG L    N T ITLIPK+   +    FRP+S C
Sbjct: 554 FTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCC 613

Query: 237 NVLYRIIT 244
            V+Y+IIT
Sbjct: 614 TVVYKIIT 621


>AT3G24255.3 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
          Length = 478

 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 16/193 (8%)

Query: 463 ILGVKEMKKDDV--------------YLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSS 508
           + GVK+  K D+              YLG  LL  K   + Y  +V KI  ++  W    
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 509 LSHAGRTVLLKSELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKR 568
           LS AGR  L+ S + S+  +++S   +P   I++I+    +F W      +K   ++W  
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120

Query: 569 MQASKKEGGLGIRDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT 628
           +   K EGGLGIR +   N+  + KL WR +    SLWVQ L+   L+ G+FW+     T
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTT 179

Query: 629 -STCTWRSILDMR 640
             +  W+ IL  R
Sbjct: 180 LGSWMWKKILKHR 192


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