BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0900.1
(652 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 105 1e-23
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 105 1e-23
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 106 2e-23
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 103 1e-22
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 87 8e-18
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 3/245 (1%)
Query: 397 YAPSVSHLMFADDLFFFRKASDFNVAQLKVILDAYEKCSGQLINFQKSSIQFSTNCDSTR 456
Y ++HL FADDL F ++ + I + SG I+ +KS+I + D+ +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63
Query: 457 RNKILSILGVKEMKKDDVYLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSSLSHAGRTV 516
+ IL YLG LL K + Y +V KI ++ W LS AGR
Sbjct: 64 AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 517 LLKSELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKRMQASKKEG 576
L+ S + S+ +++S +P I++I+ +F W +K ++W + K EG
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 577 GLGIRDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT-STCTWRS 635
GLGIR + N+ + KL WR + SLWVQ L+ L+ G+FW+ T + W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 636 ILDMR 640
IL R
Sbjct: 242 ILKHR 246
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 3/245 (1%)
Query: 397 YAPSVSHLMFADDLFFFRKASDFNVAQLKVILDAYEKCSGQLINFQKSSIQFSTNCDSTR 456
Y ++HL FADDL F ++ + I + SG I+ +KS+I + D+ +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63
Query: 457 RNKILSILGVKEMKKDDVYLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSSLSHAGRTV 516
+ IL YLG LL K + Y +V KI ++ W LS AGR
Sbjct: 64 AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 517 LLKSELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKRMQASKKEG 576
L+ S + S+ +++S +P I++I+ +F W +K ++W + K EG
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 577 GLGIRDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT-STCTWRS 635
GLGIR + N+ + KL WR + SLWVQ L+ L+ G+FW+ T + W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 636 ILDMR 640
IL R
Sbjct: 242 ILKHR 246
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 3/241 (1%)
Query: 401 VSHLMFADDLFFFRKASDFNVAQLKVILDAYEKCSGQLINFQKSSIQFSTNCDSTRRNKI 460
++HL FADDL F ++ + I + SG I+ +KS+I + D+ + + I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD-I 66
Query: 461 LSILGVKEMKKDDVYLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSSLSHAGRTVLLKS 520
L YLG LL K + Y +V KI ++ W LS AGR L+ S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 521 ELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKRMQASKKEGGLGI 580
+ S+ +++S +P I++I+ +F W +K ++W + K EGGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 581 RDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT-STCTWRSILDM 639
R + N+ + KL WR + SLWVQ L+ L+ G+FW+ T + W+ IL
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 640 R 640
R
Sbjct: 246 R 246
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 4/188 (2%)
Query: 61 FWRQRAKRHWVEENDRNTRFFHLSVLNRRRKNNIHAVKLDDQSWSSDPEKITNVFLNHFY 120
F+RQ+++ W+++ D NTRFFH +L + KN I +++DD + ++ + + ++
Sbjct: 434 FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYT 493
Query: 121 RASRAEQVTEFPSALE-LTD-RPLLAIENMM--LSTPPLKEEIWQVIRKMKSYKAPGKDG 176
++ P +++ + D P + + LS P +EI + M KAPG D
Sbjct: 494 HLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDS 553
Query: 177 YSAIFYKRCWDTIGDEVTSEIKTIFETGQLPGNLNHTFITLIPKIQAPETPVDFRPISLC 236
++A F+ W + D + +K F TG L N T ITLIPK+ + FRP+S C
Sbjct: 554 FTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCC 613
Query: 237 NVLYRIIT 244
V+Y+IIT
Sbjct: 614 TVVYKIIT 621
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 16/193 (8%)
Query: 463 ILGVKEMKKDDV--------------YLGNYLLKPKHKIASYDFIVNKIEKKLMGWKRSS 508
+ GVK+ K D+ YLG LL K + Y +V KI ++ W
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 509 LSHAGRTVLLKSELASIPIYFLSTNIVPKGVIEKIEQCQRNFWWGHSMEKSKMHYLSWKR 568
LS AGR L+ S + S+ +++S +P I++I+ +F W +K ++W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 569 MQASKKEGGLGIRDMGVVNQSMIGKLAWRFIQEPNSLWVQLLKAKYLKSGNFWTHKAKPT 628
+ K EGGLGIR + N+ + KL WR + SLWVQ L+ L+ G+FW+ T
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 629 -STCTWRSILDMR 640
+ W+ IL R
Sbjct: 180 LGSWMWKKILKHR 192