BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0960.1
(392 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60990.1 | DEA(D/H)-box RNA helicase family protein | Chr5:24... 580 0.0
AT1G16280.1 | RNA helicase 36 | Chr1:5568482-5570487 REVERSE LEN... 330 e-109
AT4G16630.1 | DEA(D/H)-box RNA helicase family protein | Chr4:93... 252 3e-76
AT3G18600.1 | P-loop containing nucleoside triphosphate hydrolas... 223 3e-67
AT5G65900.1 | DEA(D/H)-box RNA helicase family protein | Chr5:26... 211 3e-62
>AT5G60990.1 | DEA(D/H)-box RNA helicase family protein |
Chr5:24546601-24549148 REVERSE LENGTH=456 | 201606
Length = 456
Score = 580 bits (1494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 286/404 (70%), Positives = 332/404 (82%), Gaps = 26/404 (6%)
Query: 6 DGEKVMTFKDLGICEQLAEACDNLGWKYPSKIQSMVIPYALEGKDLIGLAQTGSGKTGAF 65
+ E V TF +LG+ E+L +AC+ LGWK PSKIQ+ +P+ALEGKD+IGLAQTGSGKTGAF
Sbjct: 4 ENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAF 63
Query: 66 ALPILNALLQ-----TPK-------AFFACVLTPTRELAIQIAEQFEALGSGVGVKCAVV 113
A+PIL ALL+ PK AFFACVL+PTRELAIQIAEQFEALG+ + ++CAV+
Sbjct: 64 AIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVL 123
Query: 114 VGGVDMMQQAIALANRPHIVVGTPGGLVDHLTNTKGFSLSTLQYLVLDEADRLLNEDFEK 173
VGG+D MQQ IAL RPH++V TPG L DH+++TKGFSL +L+YLVLDEADRLLNEDFEK
Sbjct: 124 VGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEK 183
Query: 174 TLDDILKAIPRDRKTYLFSATMTKK--------------IEIASKYSTVESPKQQYRFVP 219
+L+ IL+ IP +RKT+LFSATMTKK IE ASKYSTV++ KQQYRFV
Sbjct: 184 SLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVA 243
Query: 220 AKYKDCYLVYILSEMSRSTSMVFTHTCKETRLLALLLQNLGLRAIPITGQMTQAKRLGAL 279
AKYKDCYLVYILSEM STSM+FT TC TR LAL+L++LG RAIPI+GQMTQ+KRLGAL
Sbjct: 244 AKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGAL 303
Query: 280 NKFKAGECNILLCTDFASRGLDIPSVDMVINYDIPTNLKDYIQRVGRTARAVRSGVAISL 339
NKFKAGECNIL+CTD ASRGLDIPSVD+VINYDIPTN KDYI RVGRTARA RSGV ISL
Sbjct: 304 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISL 363
Query: 340 VNQYELECYIQIEKLIGKKFPEFPAQEEEVLVLLNRVTGAKQIS 383
VNQYELE YIQIEKLIGKK PE+PA+E+EVL LL RV AK++S
Sbjct: 364 VNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLS 407
>AT1G16280.1 | RNA helicase 36 | Chr1:5568482-5570487 REVERSE
LENGTH=491 | 201606
Length = 491
Score = 330 bits (845), Expect = e-109, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 257/398 (64%), Gaps = 19/398 (4%)
Query: 6 DGEKVMTFKDLGICEQLAEACDNLGWKYPSKIQSMVIPYALEGKDLIGLAQTGSGKTGAF 65
D F+ LG+ E E C LG + P+ +Q+ +P L G+D++GLAQTGSGKT AF
Sbjct: 53 DTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAF 112
Query: 66 ALPILNALLQTPKAFFACVLTPTRELAIQIAEQFEALGSGVGVKCAVVVGGVDMMQQAIA 125
ALPIL+ L + P FA V+TPTRELA Q+AEQF+ALGS + ++C+V+VGG+DM+ Q ++
Sbjct: 113 ALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMS 172
Query: 126 LANRPHIVVGTPGGLVDHLTNTKGFS--LSTLQYLVLDEADRLLNEDFEKTLDDILKAIP 183
L +RPHIV+ TPG + L N S ++LVLDEADR+L+ F+ L I + +P
Sbjct: 173 LVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP 232
Query: 184 RDRKTYLFSATMTKKIEIASKYS--------------TVESPKQQYRFVPAKYKDCYLVY 229
+ R+T LFSATMT ++ ++S TV++ QQ+ F K+ YLV+
Sbjct: 233 KSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVH 292
Query: 230 ILSEMSRS---TSMVFTHTCKETRLLALLLQNLGLRAIPITGQMTQAKRLGALNKFKAGE 286
ILS+M ++M+F TC+ + L+L+L L + I + +Q+ RL AL+KFK+G+
Sbjct: 293 ILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGK 352
Query: 287 CNILLCTDFASRGLDIPSVDMVINYDIPTNLKDYIQRVGRTARAVRSGVAISLVNQYELE 346
ILL TD ASRGLDIP+VD+VINYDIP + +DY+ RVGRTARA R G+A+S++ + +++
Sbjct: 353 VPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVK 412
Query: 347 CYIQIEKLIGKKFPEFPAQEEEVLVLLNRVTGAKQISL 384
+IE+ +GKK + + + + +V+ AK++++
Sbjct: 413 LIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAM 450
>AT4G16630.1 | DEA(D/H)-box RNA helicase family protein |
Chr4:9362176-9366449 REVERSE LENGTH=789 | 201606
Length = 789
Score = 252 bits (643), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 204/368 (55%), Gaps = 20/368 (5%)
Query: 12 TFKDLGICEQLAEACDNLGWKYPSKIQSMVIPYALEGKDLIGLAQTGSGKTGAFALPILN 71
TF +L + L AC+ LG+K P+ IQ+ IP AL G+DL A TGSGKT AFALP L
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 72 ALLQTPKAFFAC---VLTPTRELAIQIAEQFEALGSGVGVKCAVVVGGVDMMQQAIALAN 128
LL PK FA +LTPTRELA+QI + L +KC ++VGG+ + +Q + L +
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287
Query: 129 RPHIVVGTPGGLVDHLTNTKGFSLSTLQYLVLDEADRLLNEDFEKTLDDILKAIPRDRKT 188
P IVV TPG ++DHL N+ L L L+LDEADRLL F + ++++ P+ R+T
Sbjct: 288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 347
Query: 189 YLFSATMTKKIEIASKYS-----------TVESPKQ------QYRFVPAKYKDCYLVYIL 231
LFSATMT++++ K S + P + R ++ L+ +
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407
Query: 232 SEMSRSTSMVFTHTCKETRLLALLLQNLGLRAIPITGQMTQAKRLGALNKFKAGECNILL 291
+ +S ++F+ T + L +L GL+A + G +TQA+RL +L F+ E + L+
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 467
Query: 292 CTDFASRGLDIPSVDMVINYDIPTNLKDYIQRVGRTARAVRSGVAISLVNQYELECYIQI 351
TD A+RGLDI V VINY P + Y+ RVGRTARA R G A++ V + I
Sbjct: 468 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 527
Query: 352 EKLIGKKF 359
K +G K
Sbjct: 528 AKKVGSKL 535
>AT3G18600.1 | P-loop containing nucleoside triphosphate hydrolases
superfamily protein | Chr3:6399724-6403007 REVERSE
LENGTH=568 | 201606
Length = 568
Score = 223 bits (568), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 191/340 (56%), Gaps = 20/340 (5%)
Query: 11 MTFKDLGICEQLAEACDNLGWKYPSKIQSMVIPYALEGKDLIGLAQTGSGKTGAFALPIL 70
+TF L + EQ + A +G++Y ++IQ+ I LEGKD++G A+TGSGKT AF +P +
Sbjct: 89 VTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
Query: 71 NALLQ---TPK-AFFACVLTPTRELAIQIAEQFEALGSGVGVKCAVVVGGVDMMQQAIAL 126
L + +P+ V+ PTRELAIQ E L ++V+GG + +A +
Sbjct: 149 ELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRI 208
Query: 127 ANRPHIVVGTPGGLVDHLTNTKGFSLSTLQYLVLDEADRLLNEDFEKTLDDILKAIPRDR 186
A+ ++V+ TPG L+DHL NTK F L+ LV+DEADR+L E+FE+ ++ ILK +P+ R
Sbjct: 209 ASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR 268
Query: 187 KTYLFSATMTKKIEIASKYS----------------TVESPKQQYRFVPAKYKDCYLVYI 230
+T LFSAT T K++ ++ S T E +Q Y VP+K + L+
Sbjct: 269 QTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISF 328
Query: 231 LSEMSRSTSMVFTHTCKETRLLALLLQNLGLRAIPITGQMTQAKRLGALNKFKAGECNIL 290
L + MVF TCK + +++ + I G M Q +R F + IL
Sbjct: 329 LKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGIL 388
Query: 291 LCTDFASRGLDIPSVDMVINYDIPTNLKDYIQRVGRTARA 330
LCTD A+RGLDIPSVD +I YD P +YI RVGRTAR
Sbjct: 389 LCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARG 428
>AT5G65900.1 | DEA(D/H)-box RNA helicase family protein |
Chr5:26358328-26361244 FORWARD LENGTH=633 | 201606
Length = 633
Score = 211 bits (537), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 185/340 (54%), Gaps = 21/340 (6%)
Query: 12 TFKDLGICEQLAEACDNLGWKYPSKIQSMVIPYALEGKDLIGLAQTGSGKTGAFALPILN 71
TF+ L + + ++ +G+ ++IQ+ IP + G+D++G A+TGSGKT AF +P +
Sbjct: 155 TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE 214
Query: 72 ALLQ---TPK-AFFACVLTPTRELAIQIAEQFEALGSGVGVKCAVVVGGVDMMQQAIALA 127
L + TP+ V+ PTRELAIQ + L V+GG +A LA
Sbjct: 215 LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILA 274
Query: 128 NRPHIVVGTPGGLVDHLTNTKGFSLSTLQYLVLDEADRLLNEDFEKTLDDILKAIPRDRK 187
+++V TPG L+DHL NT GF L++LV+DEADR+L ++FE+ L IL +P+ R+
Sbjct: 275 KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQ 334
Query: 188 TYLFSATMTKKIEIASKYS----------------TVESPKQQYRFVPAKYKDCYLVYIL 231
T LFSAT + K+E ++ S T E +Q Y VP+ + +L+ L
Sbjct: 335 TSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFL 394
Query: 232 SEMS-RSTSMVFTHTCKETRLLALLLQNLGLRAIPITGQMTQAKRLGALNKFKAGECNIL 290
+ MVF TCK T+ A L + + + I G + Q KR +F E IL
Sbjct: 395 KRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGIL 454
Query: 291 LCTDFASRGLDIPSVDMVINYDIPTNLKDYIQRVGRTARA 330
LCT+ A+RGLD P VD ++ YD P N DYI RVGRTAR
Sbjct: 455 LCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARG 494