BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1100.1
(1142 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 168 1e-43
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 130 3e-31
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 130 3e-31
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 127 1e-29
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 125 3e-29
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 168 bits (426), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/517 (27%), Positives = 236/517 (45%), Gaps = 34/517 (6%)
Query: 611 AFCTYPCSFQVLPKKVIADLEKVERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGIRSI 670
A TY + +LPK V + V DFWW + Q+ MH+ WD L+ K +GG+G + I
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 671 EEVNLSLIAKMTWRFVTNPNSVWVKILKAKYLREDDFWNENNTTGSSHFWQAMAKTKNVI 730
E NL+L+ K WR ++ P S+ K+ K++Y + D N + S W+++ ++ ++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 731 RNNVLWIIGDGSSVKIRSDPWIPNIQHNTPTIIVTLP-------SNTFWVSDLIDTHQNR 783
R ++G+G + I W+ + + + +P S+ VSDLID
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 784 WKEELIKHHFDEVTATAILNIQLPTYNQRDKLIWCPVDSGKFTTKSFY---TQIKNLPT- 839
W++++I+ F EV I ++ D W SG +T KS Y TQI N +
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 840 ---ISEQAIVFPWKLFWKQKVMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMCNT 896
+SE ++ ++ WK + PK+Q F+WK + + LP + R + C C +
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQT-SPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 897 NQTETQHHLFGECPTFIDLA-TRAGITQYLQPD-LNPITMLSKLLQNKENEENDWLK--- 951
+ ET +HL +C TF L + I L + + I + + N N W K
Sbjct: 301 CK-ETVNHLLFKC-TFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ 358
Query: 952 -VVYLLWEWWKMRNEFHFWTITPDLSRCVWKSMDQVRYITDLNINANSTSNVQVN----- 1005
V +LLW WK RNE F + + ++ D + + + QVN
Sbjct: 359 LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 1006 RWIPPPTGKIKINFDGSYREHQASCAA--IAKTSTGEV--IGSKAKVIIPKSPIFSELEG 1061
RW PPP +K N D ++ C + + GEV +G++A + KS + +ELE
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKL-KSVLEAELEA 477
Query: 1062 FKCGLELATDLGLEEFIMEGDARVLIDAILTVDEDIP 1098
+ + + I E D++VLI+ IL DE P
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIE-ILNNDEIWP 513
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 211/472 (44%), Gaps = 36/472 (7%)
Query: 488 ITHLLFADDLIVFGKANDHNLNTIVQLMNQYSAFSGQKVNFSKSSLLFSKNVPQEVQDRF 547
ITHL FADDL+VF ++ I+Q+ +++ FSG +++ KS++ + V +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 548 VHLLEAPVMLDHEKYLGALILKKGNRIQSYTWLIDKFNNALSNWKNKYITQAGKTTLIKS 607
+H +YLG +L K Y L++K + W ++++ AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 608 ILSAFCTYPCSFQVLPKKVIADLEKVERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGI 667
++ + + S LP I +++ + F W+ + TK + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 668 RSIEEVNLSLIAKMTWRFVTNPNSVWVKILKAKYLREDDFWN-ENNTTGSSHFWQAMAKT 726
RS++E N + K+ WR +++ S+WV+ L+ LR+ FW+ NTT S W+ + K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 727 KNVIRNNVLWIIGDGSSVKIRSDPW------IPNIQH-NTPTIIVTLPSNTFWVSDLIDT 779
+ + V I +GS+ D W I H + +TL ++ V++ +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS---VAEAVVN 302
Query: 780 HQNRWKEELIKHHFDEVTATAILNIQLPTYNQ-----RDKLIWCPVDSGKFTTKSFYTQI 834
H+ R +H D T I ++ +Q D + W +G F T+
Sbjct: 303 HRPR------RHRHD--TLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKE 352
Query: 835 KNLPTISEQAIVFPWKLFWKQKVMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMC 894
T + V +K W PK + W + + L + + D C +C
Sbjct: 353 TWAATREPKLKVNWYKGVWFSHA-TPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 895 NTNQTETQHHLFGECPTFIDL---ATRAGITQYLQPDLNPITMLSKLLQNKE 943
+ + ET+ HLF CP ++ TR ++Q+ N + KLL NK
Sbjct: 412 H-HLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFT---NRWEAILKLLTNKS 459
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 211/472 (44%), Gaps = 36/472 (7%)
Query: 488 ITHLLFADDLIVFGKANDHNLNTIVQLMNQYSAFSGQKVNFSKSSLLFSKNVPQEVQDRF 547
ITHL FADDL+VF ++ I+Q+ +++ FSG +++ KS++ + V +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 548 VHLLEAPVMLDHEKYLGALILKKGNRIQSYTWLIDKFNNALSNWKNKYITQAGKTTLIKS 607
+H +YLG +L K Y L++K + W ++++ AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 608 ILSAFCTYPCSFQVLPKKVIADLEKVERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGI 667
++ + + S LP I +++ + F W+ + TK + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 668 RSIEEVNLSLIAKMTWRFVTNPNSVWVKILKAKYLREDDFWN-ENNTTGSSHFWQAMAKT 726
RS++E N + K+ WR +++ S+WV+ L+ LR+ FW+ NTT S W+ + K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 727 KNVIRNNVLWIIGDGSSVKIRSDPW------IPNIQH-NTPTIIVTLPSNTFWVSDLIDT 779
+ + V I +GS+ D W I H + +TL ++ V++ +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS---VAEAVVN 302
Query: 780 HQNRWKEELIKHHFDEVTATAILNIQLPTYNQ-----RDKLIWCPVDSGKFTTKSFYTQI 834
H+ R +H D T I ++ +Q D + W +G F T+
Sbjct: 303 HRPR------RHRHD--TLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKE 352
Query: 835 KNLPTISEQAIVFPWKLFWKQKVMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMC 894
T + V +K W PK + W + + L + + D C +C
Sbjct: 353 TWAATREPKLKVNWYKGVWFSHA-TPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 895 NTNQTETQHHLFGECPTFIDL---ATRAGITQYLQPDLNPITMLSKLLQNKE 943
+ + ET+ HLF CP ++ TR ++Q+ N + KLL NK
Sbjct: 412 H-HLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFT---NRWEAILKLLTNKS 459
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/430 (25%), Positives = 187/430 (43%), Gaps = 18/430 (4%)
Query: 488 ITHLLFADDLIVFGKANDHNLNTIVQLMNQYSAFSGQKVNFSKSSLLFSKNVPQEVQDRF 547
ITHL FADDL+VF ++ I+Q+ +++ FSG +++ KS++ + V +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 548 VHLLEAPVMLDHEKYLGALILKKGNRIQSYTWLIDKFNNALSNWKNKYITQAGKTTLIKS 607
+H +YLG +L K Y L++K + W ++++ AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 608 ILSAFCTYPCSFQVLPKKVIADLEKVERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGI 667
++ + + S LP I +++ + F W+ + TK + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 668 RSIEEVNLSLIAKMTWRFVTNPNSVWVKILKAKYLREDDFWN-ENNTTGSSHFWQAMAKT 726
RS++E N + K+ WR +++ S+WV+ L+ LR+ FW+ NTT S W+ + K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 727 KNVIRNNVLWIIGDGSSVKIRSDPWIPNIQHNTPTIIVTLPSNTFWVSDLIDTHQNRWKE 786
+ + V I +GS+ W N I VT D+ T E
Sbjct: 246 RALASGFVKHDIHNGSNTSF----WFDNWSKIGRLIDVTGHRGCI---DMGITLHASVAE 298
Query: 787 ELIKHHFDEVTATAILNIQLPTYNQRDKLIWCPVDS------GKFTTKSFYTQIKNLPTI 840
++ H +L I+ R + + D+ G F T+ T
Sbjct: 299 AVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATR 358
Query: 841 SEQAIVFPWKLFWKQKVMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMCNTNQTE 900
+ V +K W PK + W + + L + + D C +C+ + E
Sbjct: 359 EPKLKVNWYKGVWFSHAT-PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH-HLVE 416
Query: 901 TQHHLFGECP 910
T+ HLF CP
Sbjct: 417 TRDHLFFTCP 426
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 151/341 (44%), Gaps = 19/341 (5%)
Query: 7 ERLDRVLSNASWLMQYPEA-GVFHLPRYNSDHAPILLKLTTQGISTTTLSKFEVYWTHHS 65
+LDR ++N W +P A VF L SDH+P ++ L + ++ + + H
Sbjct: 284 RKLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSFLSTHP 342
Query: 66 DYTKVFQEKWNSTIG------SFTSKTNDAKDAIKGWSKQAFGTIKNRLNILRKRLLDIQ 119
+ W I S AK K ++Q FG I+++ L IQ
Sbjct: 343 TFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQ 402
Query: 120 G---LNPSMENLEIESKIREDILHLENIQCTKAEQRAKSKWVHNGDRNTRAFHLAMSVRR 176
NPS +E R+ + Q+++ KW+ +GD NTR FH + +
Sbjct: 403 SQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQ 462
Query: 177 QKNKIHQLITEDGQTIKEMENISNEFINHFQNLFSAEPVDQPPTEL-----LHGYKVFSS 231
KN I L +D ++ + + + ++ +L ++ P + +H ++ +
Sbjct: 463 AKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRC--N 520
Query: 232 EQLAN-ISRVPNSEEIKSVVMNMGSIKSPGPDGLPCFFYQHNWDTIGTELIQYIQEVFIS 290
+ LA+ +S +P+ +EI + V M K+PGPD F+ +W + I ++E F +
Sbjct: 521 DTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRT 580
Query: 291 GYIDPSINQTTIALIPKLKNPSMASHFRPIALCNTVYKFIT 331
G++ N T I LIPK+ S FRP++ C VYK IT
Sbjct: 581 GHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621