BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1270.1
(266 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17030.1 | F-box SKIP23-like protein (DUF295) | Chr2:7399108-... 60 3e-10
AT2G17036.1 | F-box SKIP23-like protein (DUF295) | Chr2:7403853-... 49 2e-06
AT2G17036.2 | F-box SKIP23-like protein (DUF295) | Chr2:7403856-... 49 2e-06
AT2G04830.1 | F-box only protein (DUF295) | Chr2:1695431-1695733... 43 2e-05
AT2G04840.1 | F-box only protein (DUF295) | Chr2:1697009-1698240... 45 4e-05
>AT2G17030.1 | F-box SKIP23-like protein (DUF295) |
Chr2:7399108-7400650 FORWARD LENGTH=407 | 201606
Length = 407
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Query: 133 YLVNSFGELLLLFKFYSFL---DDPEVQHRIYE---------TTKFDVYRLDSSEQKWEP 180
+L+ S GE+LL+ + S DP I+E T KF VYR E+ W
Sbjct: 248 FLIESCGEMLLVDMYLSLEAVEGDPGFVEEIFEHPAFYMNERTVKFKVYRFVEREESWVD 307
Query: 181 VSSLDDRMLFMGGGYSSSCLLATDFSGCEGNCIYFIDDQ-TGLSENGNEDHYMGVFDLAN 239
V L+D+MLF+G + S + C+G+ ++F + G +D +GVFD +
Sbjct: 308 VYDLEDKMLFLGDDSTFSASASDILPLCDGSSVFFNGNVFNGEDLGAMQDRDLGVFDFRS 367
Query: 240 GSIKWI---PFFSSMSWSGPVPIWFT 262
G I+ + P ++ + W P P W T
Sbjct: 368 GKIELVQKLPEYAKLFW--PPPPWIT 391
>AT2G17036.1 | F-box SKIP23-like protein (DUF295) |
Chr2:7403853-7405182 FORWARD LENGTH=404 | 201606
Length = 404
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 133 YLVNSFGELLLLFKFYSFLDDPEVQHRIY----ETT---KFDVYRLDSSEQKWEPVSSLD 185
+L+ S GE+ L+ + + PE Y ETT KF ++L E++W V L
Sbjct: 248 FLIESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTVSYKFKFFKLVEREKRWVEVEDLG 307
Query: 186 DRMLFMGGGYSSSCLLATDFSGC--EGNCIYFIDDQTGLSENGNEDHYMGVFDLANGS-- 241
D+M F+G + S A C G+ ++F + L +D +GVFD +G
Sbjct: 308 DKMFFLGDDSTFSASTADIIPRCVGTGSFVFFYTHEESLVV--MDDRNLGVFDFRSGKTE 365
Query: 242 -IKWIPFFSSMSWSGPVPIWFTPT 264
+ +P ++ + W P P W T +
Sbjct: 366 LVNKLPEYAKLFW--PPPPWITTS 387
>AT2G17036.2 | F-box SKIP23-like protein (DUF295) |
Chr2:7403856-7405182 FORWARD LENGTH=403 | 201606
Length = 403
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 133 YLVNSFGELLLLFKFYSFLDDPEVQHRIY----ETT---KFDVYRLDSSEQKWEPVSSLD 185
+L+ S GE+ L+ + + PE Y ETT KF ++L E++W V L
Sbjct: 247 FLIESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTVSYKFKFFKLVEREKRWVEVEDLG 306
Query: 186 DRMLFMGGGYSSSCLLATDFSGC--EGNCIYFIDDQTGLSENGNEDHYMGVFDLANGS-- 241
D+M F+G + S A C G+ ++F + L +D +GVFD +G
Sbjct: 307 DKMFFLGDDSTFSASTADIIPRCVGTGSFVFFYTHEESLVV--MDDRNLGVFDFRSGKTE 364
Query: 242 -IKWIPFFSSMSWSGPVPIWFTPT 264
+ +P ++ + W P P W T +
Sbjct: 365 LVNKLPEYAKLFW--PPPPWITTS 386
>AT2G04830.1 | F-box only protein (DUF295) | Chr2:1695431-1695733
FORWARD LENGTH=100 | 201606
Length = 100
Score = 43.1 bits (100), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 177 KWEPVSSLDDRMLFMGGGYSSSCLLATDFSGCEGNCIYFIDDQTGLSENGN----EDHY- 231
KWE V S+ D ML G G + L G + + IYF+DD+ ++ + +DH
Sbjct: 7 KWERVYSIGDEMLIFGRGVTVPLALKDLGHGIKSDSIYFVDDEDVWPDHKDWPDYKDHVS 66
Query: 232 -MGVFDLANGSIKW 244
GVFD+A I+W
Sbjct: 67 NCGVFDIATSKIEW 80
>AT2G04840.1 | F-box only protein (DUF295) | Chr2:1697009-1698240
FORWARD LENGTH=389 | 201606
Length = 389
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 132 IYLVNSFGELLLLFKFYSFLDDPEVQHRIYETTK--FDVYRLDSSEQKWEPVSSLDDRML 189
I + S GE+L++ ++ YE + F +++++ KWE V SL D ML
Sbjct: 262 IAIQKSSGEVLIIL---------SLKQVFYEAERLLFYIFKMNLESFKWERVYSLGDEML 312
Query: 190 FMGGGYSSSCLLATDFSGCEGNCIYFIDDQTGLSENGNEDHYM---GVFDLANGSIKW 244
G G + L G + + IYF+D ++ + D + GVF++A IKW
Sbjct: 313 VFGQGVTIPTALKDLGDGIKSDSIYFVDKDV-WPDHQDHDRRVSNCGVFNIATSKIKW 369