BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1290.1
(1061 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 80 4e-17
AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWAR... 56 3e-08
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 80.1 bits (196), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 410 LQHIREVFDAMRLNSLFMNVPKSHFFLNEVYFLGF--LISKEGMKVDQAKVRAISEWPTP 467
+ H+ V + + N K F ++ +LG +IS EG+ D AK+ A+ WP P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 468 SSPSEVRNFNGLASFYRRFIRDLSTIMALLIDCLKKGKFSWESPQEESFNLIKQRLCSAP 527
+ +E+R F GL +YRRF+++ I+ L + LKK W +F +K + + P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 528 VLAFPNFSKLF 538
VLA P+ F
Sbjct: 121 VLALPDLKLPF 131
>AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWARD
LENGTH=216 | 201606
Length = 216
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 80/145 (55%), Gaps = 10/145 (6%)
Query: 19 SPQNPEQKITNFFSPTHPERNKVFKSRLTINNKVCDFIIDNGSEENMVSSRLVEVLQLQT 78
+ Q ITNFF + + VF+++ IN++ C ++ G+ N++S LV+ L+L+T
Sbjct: 79 TQQGSSNTITNFFDW---KPDFVFRTQCVINDEACRLVLYGGN--NIISKGLVKQLKLKT 133
Query: 79 IDHPVPYKIGWISNQRELSVQRQ-CSFSFSIGTHYHDTITCDVVDMDN--CHIIFGRPSI 135
+ ++ ++ +RE V + C SIG Y D +TC VV+M+ ++FG P +
Sbjct: 134 LKKYPSVRV--MATRREDKVAEETCRVPVSIGDFYKDKVTCYVVNMEEEEDQLLFGGPWL 191
Query: 136 YDVDATHHCRENTFEFLWSRKRIYL 160
Y V ATH+ R+++ +W+ I L
Sbjct: 192 YRVQATHNGRDDSCMIIWNHNMILL 216