BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1330.1
(142 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 45 7e-06
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 44.7 bits (104), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 1 MVIDEAFQVAAVIEKLPPSWNEYKKKLRHKRKDIDMQYLILQIRVEEEHLKQEENEVAAS 60
M +DEAF V+ +I K PPSW + +L + + + L+ +++ EEE L+ V
Sbjct: 339 MFLDEAFHVSTIISKFPPSWRGFCTRLMEEEY-LPVWMLMERVKAEEELLRNGAKGVTYR 397
Query: 61 LVSKAHIVEEVKKKKLTNYKPSDQRKKGNSKFKRAGSKPNQGNSKPCYVCGKSGHLAR 118
+ + +E T+ R + +KR + ++ C CG+ GHLA+
Sbjct: 398 PATGSSQMERTPSLGTTH------RGSQSVGWKRKEPERDERVIIVCDNCGRKGHLAK 449