BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1340.1
(794 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801... 105 5e-27
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 69 1e-13
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 61 1e-10
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 56 9e-08
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C... 47 7e-05
>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
Length = 97
Score = 105 bits (263), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Query: 2 ANMVQSQIPRLTKENYGHWSIQMSVLLGSQDLWDIVQNGYVEPSLEEEDSMNDLQKNVLK 61
+N V Q+P LTK NY +WS++M +LG+ D+W+IV+ G++EP E E S++ QK+ L+
Sbjct: 3 SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLR 60
Query: 62 DSRKNDKKALFLIYQGIDSPTFEKVSEAKSSKEA 95
DSRK DKKAL LIYQG+D TFEKV EA S+K+
Sbjct: 61 DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKDG 94
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 68.6 bits (166), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 645 NRTILNMARSMLKEKMLPRNFWGEAVACAVYLLNRCPTKSVYMKTPEEAWGYYKPSVAHL 704
NRTI+ RSML E LP+ F +A AV+++N+ P+ ++ P+E W P+ ++L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 705 KVFGCIAYARIPEARRTKLDDKGEK 729
+ FGC+AY E + KGE+
Sbjct: 62 RRFGCVAYIHCDEGKLKPRAKKGEE 86
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 16/110 (14%)
Query: 452 NRLFPLNIQHGDVKC----LNSIVKDKSWLWHLRLGHLNFDGIKTLASKNMVRGLPYIDH 507
NR L I G V+ L KD++ LWH RL H++ G++ L K ++D
Sbjct: 42 NRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKG------FLDS 95
Query: 508 PH----KVCEGCIFGKHHRTNFSKEGRWRAYNPLELVHTDVCG-PLKPMT 552
K CE CI+GK HR NFS G+ NPL+ VH+D+ G P P++
Sbjct: 96 SKVSSLKFCEDCIYGKTHRVNFST-GQHTTKNPLDYVHSDLWGAPSVPLS 144
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 5/182 (2%)
Query: 16 NYGHWSIQMSVLLGSQDLWDIVQNGYVEPSLEEEDSMNDLQKNVL---KDSRKNDKKALF 72
+Y W+ L Q LWD+V NG + + + +Q L +D D KAL
Sbjct: 16 DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75
Query: 73 LIYQGIDSPTFEKVSEAKSSKEAWNILK--NSFRGVDKVVKARLQILRGEFERLSMNEGE 130
++ + F K A S+K+ W++L+ N + ++ + ++ L + E L M + E
Sbjct: 76 ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135
Query: 131 LVSDYVSRVLSNVNEMKRCGEKCDDVRVMEKILRSLTPKFYNVVIVVEESKDLESMTVDE 190
S Y+ + L + + R + D + + + +L+ F + ++EE D+ MT
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195
Query: 191 LM 192
L+
Sbjct: 196 LV 197
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 292 CYNCHKLGHYSNECWYKNEVKEESNLVENDVEINVDPTLLFSCDGFDESQTNTWYFDTGA 351
C C+K H +C ++ +E E V+ ++ +D+ + W A
Sbjct: 230 CGLCYKNNHNQEDCKFRIHTDKEEKEDEIVVDYRLETVPNLGAKTYDD---DIWIIHKMA 286
Query: 352 SNHICGKRELFVEVNENGKGNVKFGDSSKIPVLGKGNILIQLKNGTHSYISDVYYVPDMK 411
++ + F ++ K V D + + V GKG++ I++K G I +V +VP +
Sbjct: 287 PINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLN 346
Query: 412 NNILSLGQLLEKGYDI 427
N+LS G+++ K Y I
Sbjct: 347 RNVLSFGKMVSKRYSI 362
>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
Length = 405
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 16 NYGHWSIQMSVLLGSQDLWDIVQNGYVE-----PSLEEEDSMNDLQKNVLKDSRKNDKKA 70
NY W+ M L + LWDIV+ G P L + DL ++ +DS D KA
Sbjct: 18 NYEIWAPIMKTSLAEKGLWDIVKYGIPPDLSKIPELATKIRTQDL--SIYRDSAVKDTKA 75
Query: 71 LFLIYQGIDSPTFEKVSEAKSSKEAWNILKNSF 103
L L+ + F K E S+K W+++K +
Sbjct: 76 LHLLQSFLPDSVFRKTLETTSAKHLWDLVKEDY 108