BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1380.1
(461 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G31430.1 | zinc knuckle (CCHC-type) family protein | Chr3:127... 63 2e-10
AT2G13450.1 | Ta11-like non-LTR retrotransposon | Chr2:5598739-5... 55 6e-08
AT2G41590.1 | Ta11-like non-LTR retrotransposon | Chr2:17343600-... 55 7e-08
AT3G57587.1 | Ta11-like non-LTR retrotransposon | Chr3:21328263-... 54 2e-07
AT2G01050.1 | zinc ion binding / nucleic acid binding protein | ... 54 3e-07
>AT3G31430.1 | zinc knuckle (CCHC-type) family protein |
Chr3:12795861-12796871 REVERSE LENGTH=336 | 201606
Length = 336
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 77 FELTTDREKVEEGSPWYVQDELLIWERCDRNKVPTEYVFKKADFNVQIHGLPVEYLTIEA 136
F L E V PW D +++ +R + P +F F VQI G+P ++L
Sbjct: 177 FTLEESLETVLRRGPWAFNDWMILLQRWE----PQIPLFPFIPFWVQIRGIPFQFLNRGV 232
Query: 137 VKKIGAILGEPHDVPGN-EIIKWGRYARIRICLDITQALKSEVQVELSDSKPCTLKIKYE 195
V+ IG LG+ D N E++ +AR+ + DIT L+ + + + L+ +YE
Sbjct: 233 VEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYE 292
Query: 196 KLVKCCYYCG 205
+L C CG
Sbjct: 293 RLRGFCEVCG 302
>AT2G13450.1 | Ta11-like non-LTR retrotransposon |
Chr2:5598739-5599923 REVERSE LENGTH=394 | 201606
Length = 394
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 9 MGKEDDRRIKLDKEDTKSEDEGRRSLAIKLISGRTMNMIVLREILIGAWKPIGKIWVNEF 68
+G+ED + E R SL + ++ R+ N+ + L AW ++
Sbjct: 14 LGREDPALFIPHEAYAIVESRNRLSLIARPLNPRSQNLHAVISALPRAWGLTNRVHGRVL 73
Query: 69 HENSYLINFELTTDREKVEEGSPWYVQDELLIWERCDRNKVPTEYVFKKADFNVQIHGLP 128
++ F+ D V PW + + +R + N T ++ + VQ+ G+P
Sbjct: 74 NDTFVQFIFQSEIDLLSVLRREPWLYNNWFVTAQRWEVNL--TFHLLTSIELWVQMRGIP 131
Query: 129 VEYLTIEAVKKIGAILGE-----PHDVPGNEIIKWGRYARIRICLDITQALKSEVQVELS 183
+ Y+ E +I LGE HD +I Y R+RI IT L+ +++
Sbjct: 132 LLYVCEETALEIAHELGEIITLDFHDSTTTQIA----YIRVRIRFGITDRLRFFLRIIFD 187
Query: 184 DSKPCTLKIKYEKLVKCCYYC 204
+ + +YE+L + C C
Sbjct: 188 SGETALISFQYERLRRICSSC 208
>AT2G41590.1 | Ta11-like non-LTR retrotransposon |
Chr2:17343600-17344703 FORWARD LENGTH=367 | 201606
Length = 367
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 11/201 (5%)
Query: 9 MGKEDDRRIKLDKEDTKSEDEGRRSLAIKLISGRTMNMIVLREILIGAWKPIGKIWVNEF 68
+G+ED + E R S+ + ++ R N+ + L W ++
Sbjct: 14 LGQEDPALFIPHEAYVMVEATNRLSMIARPLNPRVQNLNSVVVALPRTWGLTNQVHGRIL 73
Query: 69 HENSYLINFELTTDREKVEEGSPWYVQDELLIWERCDRNKVPTEYVFKKADFNVQIHGLP 128
F+ D V+ PW + + R + P D VQI G+P
Sbjct: 74 DATYVQFLFQNEIDLMMVQRKEPWLFNNWFVAATRWE--VAPAHNFVTTIDLWVQIRGIP 131
Query: 129 VEYLTIEAVKKIGAILGE-----PHDVPGNEIIKWGRYARIRICLDITQALKSEVQVELS 183
+ Y++ E V +I LGE HD +I Y R+R+ IT L+ ++
Sbjct: 132 LPYVSEETVMEIAQDLGEVLMLDYHDTTSIQIA----YIRVRVRFGITDRLRFFQRIVFD 187
Query: 184 DSKPCTLKIKYEKLVKCCYYC 204
+ T++ +YE+L + C C
Sbjct: 188 SGETATIRFQYERLRRICSSC 208
>AT3G57587.1 | Ta11-like non-LTR retrotransposon |
Chr3:21328263-21329357 FORWARD LENGTH=364 | 201606
Length = 364
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 25/213 (11%)
Query: 4 LMGNLMGKEDDRRIKLDKEDTKSEDEGRRSLAIKLISGRTMNMIVLREILIGAWKPIGKI 63
+ G +G ED + E+ R S+ + ++ R N+ +I A + +
Sbjct: 9 IQGLDLGPEDPALFIPHEAYVYVEEFNRLSIIARPLNPRVQNL----NAVIAA---LPRY 61
Query: 64 WVNEFHENSYLIN-------FELTTDREKVEEGSPWYVQDELLIWERCDRNKVPTEYVFK 116
W H + +++ F+ D + V+ PW + + +R + P
Sbjct: 62 WGMTVHVHGRILDATYVQFLFQNEVDLQSVQRREPWIFNNWFVATQRWE--PAPALNFVT 119
Query: 117 KADFNVQIHGLPVEYLTIEAVKKIGAILGE-----PHDVPGNEIIKWGRYARIRICLDIT 171
D VQI G+P+ Y+ E +I LGE HD +I Y R+R+ IT
Sbjct: 120 SIDLWVQIRGIPLPYVCEETALEIARDLGEVIMLDHHDATSTQIT----YIRVRVRFGIT 175
Query: 172 QALKSEVQVELSDSKPCTLKIKYEKLVKCCYYC 204
L+ ++ + T++ +YE+L + C C
Sbjct: 176 DRLRFFQRIIFDSGEVVTIRFQYERLRRICSSC 208
>AT2G01050.1 | zinc ion binding / nucleic acid binding protein |
Chr2:68337-69884 REVERSE LENGTH=515 | 201606
Length = 515
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 31 RRSLAIKLISGRTMNMIVLREILIGAWKPIGKIWVNEFHENSYLINFELTTDREKVEEGS 90
++ + +K++ G + + VL L WKP G + V + ++I FEL + G
Sbjct: 78 KKCMIVKVL-GSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGG 136
Query: 91 PWYVQDELLI---W-ERCD--RNKVPTEYVFKKADFNVQIHGLPVEYLTIEAVKKIGAIL 144
PW V L+ W R D R+ + T V+ V++ +P Y + +I L
Sbjct: 137 PWRVLGNYLLVQDWSSRFDPLRDDIVTTPVW------VRLSNIPYNYYHRCLLMEIARGL 190
Query: 145 GEPHDVPGNEI-IKWGRYARIRICLDITQALKSEVQVELSDSKPCTLKIKYEKLVKCCYY 203
G P V N I GR+AR+ I +++ + LK V + + YE L K C
Sbjct: 191 GRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGD-----RYFVAYEGLSKICSS 245
Query: 204 CG 205
CG
Sbjct: 246 CG 247